HsaINT0137671 @ hg19
Intron Retention
Gene
ENSG00000105808 | RASA4
Description
RAS p21 protein activator 4 [Source:HGNC Symbol;Acc:23181]
Coordinates
chr7:102242771-102246434:-
Coord C1 exon
chr7:102246305-102246434
Coord A exon
chr7:102242853-102246304
Coord C2 exon
chr7:102242771-102242852
Length
3452 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTCCTCCACCCCCACCAGGGA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTCAGCGGGTGGGCCCACCTGACGGAGGTCGACCCCGATGAGGAGGTGCAGGGCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG
Seq A exon
GTGAGACTCAGGGGCCTGGGGGCGGGCAGTGGGTCCCCTGCAACTAGAGAAACCCAATGAGGAAGCTGAGCCCCCCCTCGCCCCACCTCTACCTCCTGGTCCCAGAGCTGGCCACCTCCCATCAAAGCCTGCTCTCAAGAGAGGGTCTCGCCAGGCACGGCGTCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGTTCACCTGAGGCCAGGAGTTCAAGACCAGCCTGACCACCATGGTGAGACCCTGTCTCTACTAAAAATACAACAATTAGCCGGGCATGGTGGCAGGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGTCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGTGACAAGCGAGACTGTGTCTCAAAAAAAATAAAAAAGAAAGAAAAAAGAGAGGGTCTGGGGAGGTTTTCTGGACTTGAAGATGCTTCTTGGGTGATTTCCACTCAAGGGGATATGTCCCTTAAGGGACAGTCTAATGTTCTCATGGAGGAACTGGAGCCATCACAGAGGAGTGGAGTAGGGGGTACGGGTGAGGAGACCCCGAACTCTGATCACACAGCCTCAGTCCCCCAGTGCTAAGGCCGGCTTCCCAATGTTTAACGCCAGTGTGAACTTGGCCTGGTGGGAGTGTGTGTAAGTGGGTCCCTCGTGGGGCTGGGGGGGTGAAAAGAGTTGCTGAAAATCTCCCGATGGGCAAATTGAGGGTTCCCCCAAGGAGGGACAGTGGTTTGGATGGTTCCATGGGCCTGAGTCACCTGTGACAGGGCCACCCCCCAACCCCCAGGGTATTTTTAGCTGCAGGCTGCACTCCCGTCTGGGCCTGGGTCTGAGTCACACTCTGTCCGTGAGAAGCGTCTTCCCTTCCGGCTCCAAAGCCACCTCCCCAAGTCGCTCCCTGCCTGTGAGGCAGGAGGGTGGCCCCCAGCCAGGCAGCCCTATGGAGCCAGTGTTCCCCCCACCCTTGAGGGGTCAGCCTGTCTAAGAGGAAGACTTCCCTTGGGCAGAGGGGTGTGGGTCGGATGATGCCCATGTTGCTCACTCTGGCTTCCCGGGAGTTATTTTCTGTCCTGGGAAAATAGAAATGGATGGAAAATGTCTGGGCTTGGGCCGAGCCTCAGCCACACCCCCACACTCGCTCACTCTCTGGCCTCTGCCATTCATTCCCCCCCGCCCCACCCCAACTCACCCGCTTCCTCCATCCTTATCCTTTCCAGGCACCAGGCTGTCTGGGGGACAGGCATGCACACGTGTGCACCCGCTCACACACGTGGCCGGGCTCTGGGACCTCGGGGCCACTTCTCCCAGGCACCCATCGTCACCCACGGAGATGGGAGGCATGGAAGCATGTCTCCCTGGCCCTCCCCTCTCTCCAGGAATCTCCCCTGTCCCATCCTCTGGGGCCACAGTGGTTGGCCTTCTAGTGAGTCCTAGCAGGGGAGAGGAATGTCCAGGCCTCTCTCAGAGTGAGGGGACTTGTCCCCCGTTGTCCTCGGCAATGAGACTCCTGCTGCAATTCCAAGTCAGCCTAAGAAGGTCCATTTGCTGCGGAGAAAGAAAGAACATTTCCTCATTTTTTCTGGGGAGATTCTCAATATTTCAGTAAAACCTTGGGGTTTTTTTGTTTTTTGTTTTTGAGACAATCTCGCTCCATCATCCAGGCTGGAGTGCAGTGGCCCGATCTCAGCTCACTGCAACCTCCACCTTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCTAGTAGCTGGGATTACAGGTGTGCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGACTTCACTATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGGCGTGAGCCACTGCACCCGGGCTGTTTTTTTTTTTTTGGTGGTTTTTTTTTTTTTTTTTTTTTTGAGGCAGTCTGGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTTTTCTTGGCTCACTGCAACCTCTGCCTCCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTTCCCAAAGTGCTGGGATTATAGGAATGAGCCGCTGCACCCAGCCTCAATGTTGGGGTTTTATTAGACAGTCTTGAGGGGGAAGAAAGGCAGGTATGAGAGGCTTAAAATATCAAAGATGAGTGGGCTTTGGTGTTCTTCCACAAAGAGTTCTAAGTAGGGGATACTGGCAGGGTGCAGTGGCTCACTCCAGTAATCCCAATGCTTTGGGAAGCAGAGGTGGGAGGATCTCTTGAGGCCCAGATTTCGAGACCAGCCTGGGCAACAGCAAGATCCTGTCTCTACAAAAAAATTTAAAAATTAGCCAGGTGTGGTGGGGCACACCTATAGTGCCAACTACTTGGGAGGCTGACGTGGGAGGATTGCTTGAGCCCAGGAGGTGAAGGCTGCAGTGGGCTATGATTGCATCACTGTACTCCAGCCTGAGCAACAGAGCAAGACCCTGTTTAAAAAAAAAAAAGAAAAGAATAAAAGGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTCGACGGCAGCCTGGCCAACCTGGTGAAACCCCATCTCTACTGAAAATACGAAAATTAGCTGGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTAAGATTGCACCATTACACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGCTGGAGGTACCGTGACTAGACTAGGGCTGTGTAAAGACCCATCTATGGAGAAAGGGCAGGGCCGCCCATCAGGGCTGCACCTCACTCCTCCACCAAGTAGAGCGACATTACTGGGGCAGACCTTCCAGAAGCACACTCTCTCCCTAAACCTGAGCCCAGTAGCGATTCACTTTTCCATTTTCCTGATGAGGAAACCGAGGCTTAGGGCAGCCCTGGGAATGGAGGGCCAGGAACATTGCCCCGGCGGTTCCCTGGCAGCACTCACACCACCCCCCTGCCACCCCCAGAGCAAGGTGCAGCCACTGGCCTGCAGCTGCCTGGTGGGAAGGACCCATGGCCTCTACCTTGGGGGGTTCTTGGCCACATGGGCGATCCTGGGGAGATGGCTATGGGAGCAGGGCCCAGAAAGGGCAGAGGCGCACTGTCCACAGTCAGCTTGCCAGGGACGGAATGTGCCCAGGCCTTTTGGCCCGCTGTGGTTACATAATGGTGGTGACAAGTGGGGGAGGGGGGGCTCAGGGACAAGTCGATGATCCAATCTTCCTCCACCCCCACCAG
Seq C2 exon
GGATCTGGCCCCAAAGGACCGCAATGGCACATCTGACCCCTTCGTCCGAGTGCGCTACAAGGGCCGGACACGGGAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808-RASA4:NM_006989:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(22.2=18.2)
A:
NA
C2:
PF0016825=C2=PU(33.8=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)