GgaINT1023382 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11197019-11197942:-
Coord C1 exon
chr15:11197813-11197942
Coord A exon
chr15:11197101-11197812
Coord C2 exon
chr15:11197019-11197100
Length
712 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGACCCCCATCCTCCCACAGGGA
3' ss Score
11.06
Exon sequences
Seq C1 exon
GCATTGACAGCTGGCTCAGCCTGGCGCCTGTGCATCCTGACCAGGAGGTGCAGGGTGAGATCCACCTGGAGGTGAGGATGCCTGAGCAGGGCCACCCACGGGTGCTGCGCTGCCACCTCATTGCAGCCAG
Seq A exon
GTAGGGAGTGGGGCCCCACCGGGGTTTGTGTTGGGGTCAGCGGGTTTGGCTTTGTGGTGGTGGGGGGGGTCAAGGCTGCCAAGAAGGGTCATCGCCATGTCCTGCTCAGGGACACTGCTGCTTGCAGCCCATGTGTCACGATGCTGTGGGGTCTCAGCACCTGAGCCACACTGCTCGGGCACTGCCAGCCCTGCTGGGGGCCAGGCTGGGGACAGGAGGCAAGGGACTGTGCTGTCCCTGCGGATATTCCCACGGGGCGGACAAGATCTCACATGGCATTTCTTCCCGTTCATTTTAAAATCAGGGGAAACTGAGGCAGCCCCACCACTGCCGTTGGAGGAGGTTGGGATGGGGCTGCTCTATGGGTGCATATGTGTGTCCATGTGTGCGTGCGTGCGTGTGCACACGTGTGTGTGTTTGTGTGCCCGCACGTGTGGCTGCCAGACCGGAGGCTGTTGGCAGAGCAGCATCCTGCTGCCATGGAGACCAAAGCGGCTGCCATGGCAACAGGATGGCCATGGGGACAGCCAGGAGGGACAGCAGCATCCCCACTGTGCCCTGTGCCCCCCAGGGACCAGCTGCCAACATCCCCTCCCTGGTGCCACCTGACATACACGTGCCTCACTGCAACCGTGGTGACACAAGGGGACAGGGGACCGTGCCAACAGGGCCGGGTACCCATGGCATCCCCCTGACCCCCATCCTCCCACAG
Seq C2 exon
GGACCTGGCTCCCCGGGACCCCTCAGGCACCTCAGACCCCTTTGTCCGGGTGTCGTGCTGTGGGCACACGCAGGAGACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.5=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGACAGCTGGCTCAG
R:
CTGTCTCCTGCGTGTGCC
Band lengths:
210-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]