RnoINT0124494 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41433984-41437052:-
Coord C1 exon
chr12:41436923-41437052
Coord A exon
chr12:41434066-41436922
Coord C2 exon
chr12:41433984-41434065
Length
2857 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TTTTCTTCATCTATCCCCAGGGA
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGATTGACAGCTGGATCAACCTGAGCCGAGTGGATCCAGATGAGGAAGTGCAGGGTGAGGTCTGCCTGGCTGTGAAGCTGCTGGAGGATGCTCGGGGGAGATGCCTCCGCTGCCACGTGAGACAGGCCAG
Seq A exon
GTGTGCTTGCCCGGGGTGGGGGGAGATGTGTGGGGTGCTCTGGAAATAAGCAGGGAGGCTGGGGTGTGGCTTGGTGGGTAGAGTGTTCCCCTAGTATGCACAAGGCCCTGAGGTCTATCCCCAGCACCACATAAACTGTACCTGGTAGTACTCATCTCTAATCCCAGTTTTCAGGAGGTGGAGGCAGGGAGTTTTAGGCTAGCCTGGGCTATAAGAAACTCTAATCCAACAAACAAAAACCCCAAACCAAAAATGAGCAGGAGTACTGATGATGGTGGGGACCCTCTTGTCCTTCTCGATTCATAGCTACGATCCCCTCCTGCACTTGCCCACCATGTTCTTAAACAACAGACTCAGAGGTGTCAGCTTTCAGGGGAGAAAGCAACATCTTTGTTATTTTGAGGCAGGGTTTCTCTATGTAGCTTAGGTTGCCCTGACACTCACATTATAAAACAGACTGGCCTTGAACTTACAGAGATCCTCCTGCCTCTGCTTCCCAAGTGCCGAGATTAAAAGCCTGTGCCACCACAGCCTGGCAAAAGCAAACTCTTAACCCAGGTGGCCACGGACCAAACAATCAGCTGGATTCTGGAGATGGGTGGACAGATGAGGGTGGGGCGGGGAATAGTTGCATTTTAACACATTAGGGCTGGAGAGATGGTTCAGCGGGTAAATCACTTGTCACTCAAGCCTGATGACCTGAGTTTGATCCCAGTAATGCACAGTGGAAGGAGAAAGCCAACTCTAGAAAGTTCTCCTCTGACCTTCACACGTGTGCATGCATGCACAGACAGGCAGGCAGGCAGACAGGCAGGCAGTTAGCAGATACACACACACACACACACACACACCATACATACACACACCATACATACACACATACACACAAATACCATACATACAGACACACACACACACACCATACATACAGAGACACAGACAGACAGATAGACACACCATTCATACAGAGACACACACACCATACATACAGACACACACACACATACCATACACACACACACACACACACACACACACACACACACACACACACACACACACTGTGGCTTCAGGCATGATCGGTCCAGGAACCCAGAGGGTGATGTCAGGCAGTGTCTCTGTGAGTGGGGACAAGATAGATCTCGTGGCCCAAGGCTGATGTTCTACCAACTGGCCAAGATATTCACTTTTACAGACAACCTCAGGGTTAATTCTTATTTGGTTTTCCAGACAGGGTCTCACTGTGTAGCCCTGGCTGTCCTGGAACCCACTATGTAGACCAGGCTGGCCTCAAACTCACAGAGATCTGCCTGCCTCCGCCTCCTGAGTGCTGAAATGAAAGGAGTTCTTATTGGCTAACCTGGGAGGTTGACCACACTGGAGTCATGTGGGCTGAGAGGAAGGGTGATGGGAAGGAAGCTTTAAAAAGTCACCAGACCCAGGGCCAGTAAAACCTGCCCAGCCGCATCCATCTCCCATCCTGAGTCCCTCTCTGCTCCCTCCTTGGCCCTCGAATCCCATCCTTCTGTTCTCTCTCATGTCTTCATCCTCTTGACAACCTGTCTTTCTGCCCTCGACTCACTTCTCTCCCCGAACCTTCACTCTTAGGTTCTGCTCACACACATTAAGGACAATCCATATTTCTAGCTTGCTGTGTGACCGTAAGACCCCTCCTCGCCTACTCTGAGCTCCTCTTGCTACCTCTGGATTCCGGTCCCTGTCTTGGCCCCATCTGGGTGTGTTGAGAAGTGCGGACAGGGAATAGTGATACACAGAGGATGGGAACCAGATAGCGGATTGTGCTCAGGGGTCTGAGCTCAGCTCTTCTGCACATGACCCCTCCCCAGACACTAGGCTGTACAGGATCCTTTGTAAGCAGCAGAGGGACCGATTGCTGTCGCTTAGCAACTGTGTCGGTTCCTAGGAAACCAAAGGCATTCCATGGCCGGGAAGAAAGCTGGAGGAAGAAACAGCCCCTGGTGGTGGTGGTGGTGGTAGTGGTGTTCCTAGATTTGGGGACCTCGAAAAGTGGGGGTGGGGGATGGGTAAGCTATCACAGGTGAGGCTTTGGGTTGTCACGGCAACCGCAGGCAGGATGTCTGTGTCTCATGCATTCCCTTTGTTCCTAAGCAAGGTGTGGGCATGGGTGTTTGTTGAATGAATACGTGATCTGATCAGAGTGCTCTGCTAAATAACTTGCCTGTGTCCTCTCATTGGACTCGTGGCTCCATGAACTTGGTCTGTTACTGTCCTTATTTTTTTGGGACTAAGCCCAGGAGTGGAGGTGACTTTTTTCTTTCTTTCTCCCTCTCTCTCTTTTTAAGCCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGAAACCCAGAGATCCGTTTGTCTTTGCCTCCTGAATGCTGGGATTAAAGGCATGGGCCACCTCCTTCAGGCAGAGGAGACTTTCTCTAATGTCACCCAGCCAGGGAGTGCATAGCTAGGCTTAGAATTTATGCCTGTAGCTCCCGGTGTAGGGCCTCTGGGGAAACTGAGGCATTCTTTTCCATTGTACTTTCCCTTGCTGGGCTTTGTGATACAGAGTCTGATCTTTACCTCAGTTTCCCCATCCAAAATCAGGAAATCTCATGTTTCTATATAGGTTCTGTGTCTGGAAGCTGCATGGGCCCAGTGAGGACCAACCAGGTCTGAGCCTGTGTGATGGACAGGCGTGTTGCCCTGGAGATAGCACATTGCCATTAGAATGATCTAGTTTGCACTCTGTTTCCTGGGCCCACCTTGGGTCTGGGTCCTCGAGGGCCTGTGGTCACACATCCCTTTTCTTCATCTATCCCCAG
Seq C2 exon
GGACCTGGCCCCTCGGGACATCTCTGGCACATCGGACCCATTTGCCCGTGTGTTCTGGGGCAGCCGTAGTTTGGAAACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]