HsaINT0137695 @ hg38
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113119362-113121638:-
Coord C1 exon
chr12:113121509-113121638
Coord A exon
chr12:113119444-113121508
Coord C2 exon
chr12:113119362-113119443
Length
2065 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTTTCCCCATCTGTTCCCAGGGA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGATTGACAGCTGGATTAACTTGAGCCGAGTGGACCCAGATGCAGAAGTGCAGGGTGAGATCTGCCTGTCAGTGCAGATGCTGGAGGATGGGCAGGGCCGCTGCCTTCGCTGCCATGTGCTTCAGGCCAG
Seq A exon
GTATGCTTAAGGTGGAGGTGGTGTGGAGGGTGGTCTGAGAATGAGCAGGAGTCCCCTGGGTCTCCCCTGCTGCCTGGCGTTTGGGACCTCCTCAGTCCTGGGGCACTTCTGGGCTGGCAGTCAGGTTCCCTGTGTGGACAAACAGTCCAAGCTCACTGGGTTGTAAGTTCCTGGGGGCAAAATCCTGTTGAGTCCCCAGGGACTAGCAGCAACAGACCAGACACTCAGGATGACAGGTGACAGGTGAGTGTGGAGGTGTAGTCATTAAATTGTAACTGACAAATACCCAACTCATACTGGCTTAAGCAAAAGAGCTACTTTATTGGCTTATATGACTGACATGTAGCTTCAGGCATGGCTGGGTCCAGGTGTTCAAACGATGCCATTAGGAATCTGTCTTTTAGCTCTGCTGGTCTCTGTGTTAGCTTCATTCTTAGGCAGACTCTCCCCAGGTGAGAGATGGCCCTAGCAACTCCAGGCGGGCACCCTGCCAGCTTAGCCACTCCAACAGAAAAATCACTTCTATTTCCTACCATTTCCAACCAATGTCCTGGGATTAATTTTTACTGGCTCAAGCTGGGGCACATGTCTATCTCTGAACCAATTACACTGAATAATGGATCAGGCCTGAGTCACAAGCCCATTACTGGAGCGGAGGGAGGGATTGGACCCCACTAAGTCATGTGAGAGGGGGGTGGTGAGAAGGAGATAGGTCCTGTCCCAAAGAAAAATCAGATGGAAGATGGATGCAAGACCAGGAAAACCCACAGGTGGCCCTCTAGGGGCACCAGCTCATGGGACACCCATCTTCCCTCTTGCCTACTTGTCATGGCCATCCCTTTTTCCCTTCCTCAGCTCTCTGTCATTTTGCTCCCTCAAATACCTCCACCCTTCCCCCACTCCTCTCTCATCCTGTTTTTCTGCCTGTTTTTCACCTCCCCAGCTCTCATTTTTAGGAAAATCCCTGCCCAGATTGGGGAGGACCTCCAATTTCCAGCTTGCTGTGTGACCATAAAGCCCTTCCTTGCCCTCTCTGAGCCTCTCCCACCGCCTCCAGATTTTTGCTTCCAGCCTTGGCCTCAGCTGGGGCTTCCTAGAGTCTGGTTGAGGGAGAACCAGGGAGGCAGGTGACAGGCTGAGGGACTCAGCAGGGGGCAGAGGCTCCTGGTCTTCCTTGAGCCCATGGCCCCTTCCTCAGCCACAAGGCTGTGCAGGATCCTTGCAGGCATGAGAGGGACTGATTGCTGTCGCTTAGCAACTGGGCCAGCTCCTAGGAAACCGAAGAAGGCTTTGGATGCTAAGCAGGGGTGGGAAGGGAGCAGGAGGAAGAAGGAAGCAGCCCCTGGTGTGGGGGTGGGGTGGTGGTGTGTTCCTGGGTTTGGAGAACGTCAAGAAGGAGGGATGGGGAAGCTGCCTGGAGTAAGACTTTTGGGTTGTCATGGCAACCAATGGCAAGGAGTCCCTGCCTCATGCTTTCTCTTGGGTCCTAGACAAGGTGTGGGCATGGGTGTTTGTTGAATGAATAAATGAACCAAGCACCCATCACCTGCCAGGTGCTATGCTTGGCCCTTTACACACATCATCCAATCTAACCCTCGGCTCTATGAGGTTGGTCTGTTATTACTCCCATTTTCCAGGTAAGGAAATGAAGACTTAGAGAGGGGAAGTGACTTTCCCTAGTGTCCGCTAGCCAATGAGTGCAAAGCCAGGCTTTGAACCTTTGCATCAAGTTTCCCATCTGGGGCCTCCAGAGAATCTGAGGCTCTCTTTTCCCCCTCCCTGCTGCACTTCTACTTGCTGGGCTTTGTGATGTAGGATATGACCTTTTGGTGCCTCAGTTTCCTCATCTGAAAAATAGGGATATACAAGTGCCTCCCCATAGGGTGGTGACAGGAAGATACTGGGTTTGGACGGTCATGGTTAGGGGTGTCCCTAGCTGGACCCCTACATGGAACAGTTTGTTGCCTTGGAAACCAGCGACATTGGAATGATCTACTCTTAACAGCCTTTCCAAGGCCCAACTTGGGTGCCGTGTTTCCTCACTCCTTTCCCCATCTGTTCCCAG
Seq C2 exon
GGACCTGGCTCCCAGAGACATCTCTGGCACATCTGACCCATTTGCACGTGTGTTTTGGGGCAGCCAGAGCTTGGAGACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344:ENST00000261729:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development