BtaINT0122608 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63413483-63415666:-
Coord C1 exon
chr17:63415537-63415666
Coord A exon
chr17:63413565-63415536
Coord C2 exon
chr17:63413483-63413564
Length
1972 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
CTTACCTCATCTGTCCTCAGGGA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAATCGACAGCTGGATCAACCTGAGCCGCGTGGACCCGGACTCGGAGGTGCAGGGTGAGATCTGCCTGTCCGTGCAGACGCTGGAGGACGTGCGGGGCCGTTGTCTTCACTGTCACGTGCTCCAGGCTAG
Seq A exon
GTATGGTCATGATGGGGGTGAGGGTGGGGTGGGGGGTGGTCTGAGAATGAGCAGGAATCCACTGGATTCCTCCCAGCTGCCTTGAGACCACCTCACTCCTGAGATATGTCTTGGCTCAAAACCGACATCCTTTGTAAGGCAAACAGTCCGAGATCACCAGGTGGCAAGTTTCTTGGGTTAAAGCTTGAGCAAAATCTTTGTTGGGTCCCCAGTGACCAGCAACCAAAGGCCAGATACTCAGAATGACCAGGCAGATGGGTGTGGACATGTATTAATCAAATCATAAGTGATAGACACCCAATTTATACTGGCTTAAGCAGATTGACTCATGTGAATGACATGCAGCTTCAGGCATGGCTGGATCCAGGTGCTCCAACAGAGACATCAGGAATCTGTAGACATAGATTCCTTGGGTGTCTTTTGTATTAACTTTATTCTCAGACAGTTTCTCCCCAGGTAGGGGCAAAGCTGACCCTAACAGCCCCAGACTGGCATCCTACCAATTTGGCAGCTCCAATGGAAAAAACTATCTTCCACCATTTCCAACCAGTATCCTAGGACTAATTCTTATTGACCCAGTTTGGAGTACCTGCCTATCATTGAACCAGTTACACTGACTCTGATTGGTCAGACCTGAGTAGCAAGTCCCTTCCTGGCAGCGAGGGAGGAATCAACCCACTCAAGTCATGTGGGCTGGGAGAAAGGGAGGGGCAGGTCCTGTCCCAAGGAAACATCAGAAAAAAGATGGATACAACTCCTGGGATACCCATCTTCCCTCTTGTCTGTTTATCACTCCCCTCTTTCTCAGCTGCCCCATCACTCTATTTCCTTGACTATTTCCACTCCTTTCACGCTCCCATGTCTTATTTTGTTTTTTTGCCATGTTTTTCCCCACACCTTACTCCCTTTATTCTTACCTTTAGGCCAGTCCTCACCCAAGTTGGACTAGGTCTCTATTTCTAGTTTGCTCTGTGACCTTAAAGTCCTTTCTTGCCCTCTCTGTGCCTCTCCCACCATTTCCAGATTCTATCCTCAGCTGGAGCTCCCTGGAGATTGAATGGAGTAGCAGGCAGGCATAGGACAGGCAAAAGGACTTTTTAGGGGTAGGGACTCCTCACTTACTCTGTGCCCATGGCCTCCTCCCCAACTACAAAGCTATGCAGGATCCTTGCAAGTAGGAGAGGGACCGATTGCTGTCGCTTAGCAACTAGGCTGGCTCCTAGGAAACCAAAGAAGGCTTTGGATGCCAAGCAGGGTGGGAGAGAAACAGCAGGAGGAAACAAGCAGCCCCTGGGTGTGTGGGGGAGAGGGTCCCTGGATTTGGGGGACCTTGAAAAGGAGGGGTGGGAGAGGCTGAAACTTGGGTTGTCATGGCAACCAGAGGCAGGGGGTCCCTTCCTCATGCCTTTTCTTGGTCCTAGTGTGGGTAGGAGTGTTTGTTGAGTGAATGAGTGAGCTAAGCACTCTCCACATGTCATCTCATCCCTTGGCCCTGTAAGGTCAGTCTGTTATTACTCTGATTTTTCAGATGAGGAAATTGAGGCTCAGGGAGGGACAGTGACTTCTCCTAGTGTCACACAGCCAGTGAATGGGAGAATCCAGGCTATGAACCCTGGCATCTGGTCTCCCATCCATGGGCTCCAGGGAAACAAAGGCTCCCTTTCCCTTCCTCACTGCACCTTTACCTGCTGCTTTGTGATGTTCAACTTGACCTTTCTGTGCTTCAGTTTCCTTACCTAGAAAATGTGGGCATAGTAATGTGTCCTCGCAGGGTAGCGTTAATCAAAAGGAAGATACCAGGTTTGGACGGACCTGGTGAAGGATGCTCTTTGCTAGATCCCTACAATGTACTATTTTTTTGTCTTGGAAATCAGCAGCATTTGAATTGTCTACCTTGAACCCTTTCCCCAAGGCTTGGGTCTTGGTCCTTAAGGGTCCTGTGACCCGTACTCCTTACCTCATCTGTCCTCAG
Seq C2 exon
GGACCTGGCCCCCCGAGACATCTCCGGCACGTCTGACCCATTTGCGCGTGTGTTTTGGGGCAGCCAGAGCTTGGAGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTGGATCAACCTGAGC
R:
CGAAGTCTCCAAGCTCTGGC
Band lengths:
207-2179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development