DreINT0017752 @ danRer10
Intron Retention
Gene
ENSDARG00000041515 | RASAL1 (1 of 2)
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr8:1630892-1632342:+
Coord C1 exon
chr8:1630892-1631021
Coord A exon
chr8:1631022-1632230
Coord C2 exon
chr8:1632231-1632342
Length
1209 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TGTGTTTGTTTTTGCTACAGTGA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GTCTGGATAACTGGTTAAATCTGACTCGCGTGGATCCTGATGAGGAGGTTCAGGGTGAGATTCATTTGGCTCTGGAGCTGCAGAGAGAAAAGCACAGATCCTGCCTGAGCTGCCACATCATCGAGGCTCG
Seq A exon
GTGAGGACATGCTGATCTGATCATTCATTTTCCTTCGATTTAGTCCCTTATTTATCAGGGGTCGCCACAGCGGAATGAACCACCAACTATTCCAGCATAAGTTTTACATAGCGATTGTCCTTCCAGCTGCAACCCAGTACTGGGAAACACCCATACACACTCATTCACACACACTCATACACTACAGCAAATTTAGTTCATCGGTTCCCCTTTAGAGCAAGTGTTTGGACTGTGGGGGAAACCGAAGCACCTGGAGGAAAACCATGGTAACAAGGGGAGAACATGCAAACTCAACACAGAAACGCCAACTGAGCCAGCCGGGACTCGAACCCGTGACCTTCTTGCTGTGAGGTGACTGTGCTAACCACTAAACCACCATACCACCCCTTCATAATAATAATAATAATAATATTTATGGAGAATTTGTGAAGACACACTGCTCTGCTCATTTAATAATAATAATAATAATAATAATAATAATCATTATCATAATGATAATAAAATATTTATGAAGGCTCGGTTTAGTGAGAACACACGGATCTGCTTCTGCTCACTTAATAATATAATAATAATATTAATAATATTCATCGAGGCTTTGAGGACACACTGCTCCCCTTCTGGTCCTTTAATCATAATAGAAGTAATAATGATAATAATTGGGCGGCACGGTGGCTTAGTAATTGGTGGTTCATTCCACTGTGGCGACCCCTGATTAATGGGGTTAAGCCGAAGGAAAATAAATGAATTAATGAATAGTAATACTCATCATAAAGGGATCACATGTTCACATATGCCAAACGAACCGCGCTAACTGGGCAAACGAGATACGTTCCGAAACAAAAGTGTAGGTGTGAAAGCATCCCTAAAGTTCTCTGTAGTTGTCTTGACAACACACACACTCTCTGGGATGAGCTGCGTGCAAGAAACTTGCGGCTTTTAGTAAACCATTCAAAAGATGCCGCTCTAAACGCAAAAAAGTGCATTCGATCGGCCCCTTATGCAGCCAAACTAAAAATATATAAAATAATATACCAATTTAACTGATACCATTAATCGGTTACAAACGCACCATTACGGTTAATGGTTAATCGATTATTTTGAGCATCCCTAATTTGTATGTTTGAATTTGACAGTACTGCAAACACTCAGATTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGTGTTTGTTTTTGCTACAG
Seq C2 exon
TGATTTGGCTCCGCGTGATATCACCGGCACGTCTGATCCCTTCACCAGAATCATCTACAACAACCTCAGCGCTGAGACATCGGTGAGATTATCTTCATCCAGATGCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041515:ENSDART00000060865:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.6=18.2)
A:
NA
C2:
PF0016825=C2=PD(79.1=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGATAACTGGTTAAATCTGACT
R:
TCAGCATCTGGATGAAGATAATCTCA
Band lengths:
239-1448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]