RnoINT0124473 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23612704-23615678:-
Coord C1 exon
chr12:23615549-23615678
Coord A exon
chr12:23612786-23615548
Coord C2 exon
chr12:23612704-23612785
Length
2763 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTCCCTGTTTCATTACCAGGGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
GATTCATCGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGTCTGGAGGTGGTGCCAGGGCTCCACGCCAGCCGGCTGCGCTGCTCTGTGCTTGAGGCCAG
Seq A exon
GTGAGATGGGTTGGGGGAGGGGATGTGGGGGAGGCCCGGTCTCCTCTTCTTCCTTCTACTCTCAAGAGATGGCCTGCCTGTCCAGACACTGAGATGTTGCCTGAGCGACCAATCTACAGGGCGTAGGAACAGGGTGATCTTTTCTTTTGATCTGAATTTTCTTGTTTTGTTGAGACAGTTTCTCTGTGTGTCCCTGGCTGCCCTGGAATTCGCTCTGTAGACCAGGCTATGCTCAAACTCATAGATCCGACTGCCTCTGCTTACCTAAGTACTGGGACTAAAGGCCTGCACCACCACCTCTGGGCTCTTTTCTGTCTCTGTCTCTGTGTGTCTGTCTGTGTGTCTGTCTGTCTGTCTGGCTGGCTGGCTGGCTCTATCTCTCTCCCTCTCTCTTTTGAGACAAGGTTTAGCCTTGCAGCATTGACCATGACCTTCTGATCCTCCTACCTCCACTTACTGAGTTCCGGAGTTACCTGTGTGAACCACGGTATCCGGTGTATGCTGTGCTAGGGCTCAAACCCAGGGCAAGCACTCAACCAACTGAGCCACAGTTTCCTGTCTTTTATTTTTGCTCAGTTTTGCTCTGAGGCTGAGGCTGGCCTGGAACTCATGACTTTCCTGCCACACCCTCCTGAGTGCTGGGATTGTAGGGGCCCCACCTTGATCAGCCTAAAATGATGCTCGAAAGTGGAATTTTAGGTCCTAAAAAGTAGGGGAGCAGAGGTTGTGTGCAAACTGTTTTTTGTTTGTTTGTTTGTTTTTTGGTATTTTATTTTATTTTTGGTTTTTTCAAGACAGGGTTTCTCTATGTAGCCCTGGCTGACCTGGAACTCTCTCTGTAGATCAGACTGGCCTCAAACTCATAGAGATCCCCCTGCCTCTGCCTCCCTGAGTGCTGGGATTGAAGGTGTGTGCCACCACTGCCAGGCTATTGTGTGCACCCTTGAACATTCAGATATCAATGTCCCACTGCTAGGTCTGGGCTTCCGTGGACAGCTCCAGTACATAAACTTCCCCTGTGTGTTCACATGTGTGTGGTATGTGTGGCATGTATGTGCATATGTCTGGTGCGTACTGTGGGGTGTGTGTGTGTGTGTACATGCTTGTGCGTGAGCATGCACTGTGGGTATGTTTATGTGTCTGTGTGTGTATTTGTTTGTGTTTCCTGTAGTGTGTATGGTGTGGTGATGTGTTTGTGTGTGTGTGTGTTTGTGTGTGCTATGGGTATGTGTTTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTTGTGTGTGCTATAGGTATGTGTTTGTGTGTGTGTGTGTTTGTGTGTGCTATGGGTATGTGTTTGTGTGTGTGTGTGTTTGTGTGTCCGTGTTGTGTATGGTCTCTCAGGGGGTGGAAGGAGGAAAAGGTCTTGATATGTCCAGACAGGGTGTGGGATGGGATAATGGCTTGGATGTGGGCCTGAGTCACCTGTGACAGGACTAACCCCCAGCCTTGGGGTATTTTTAACTGCTGTCCCCACTCCTGTCTGGGCCTGGCTGTGACTCACAGACACCCCATAAGAGGCGCCTTCCCTTCTGGCTTCAGCCTCCTCCCTGTCCTGTGAGTGTGTGTGTGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGCGGGGCTGTCTGTCTCTCATGGAGGTCTCCCCCCGTGAAGGAGGAGGGAATAACATGTTTAGACAGGGCGTCTGGTAGGACAGCACAGTCCCTCCAGTCCACCCCTAGTCCAGTGGGCAGCCTCCAGCCAGCCAGTTCCACAAAAGACACTGAATATGCCCGAGACAGTTGGCCCATTTGGGAGGAAGTGGTCTCTGGTCAATGGAGGGATGTGTGTTATATGATTGACACTTTGGATATCTTGTGGCTACCCTGAGGCTGGAGCCCTGAGGAATGGCTGAGCCACAGCCTATCCGCCCCTGATTCTTCCTCTCATCCATGGTCTCCCACCCACCTCCATCCACCCTCCTCAGCCATGCTGGCACTGGGCTGCCTCTGGCACTGTGTTGTACACACGGGTTCATGGTTGCATACAGAACCAAACTTCAGGACCTTGAGACTGCCACTTAAGCATGCATTGTAACTCATCAGGACGGGCAACATGGAAACATGTGCCCCCAGCACTTCCCTACCTCTGCTCGAAGGACTTCGGCCAAGCCACATCAGCCTCCTCTTAGCAAGTCCGGTAGGGGGAGCTCGATGCCCACCCCTACTCTTTTTTTTTTTTTTTTTTTATATACATTATAGCTATCTTCAGACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAAAGCAGTCCCACCCCTACTCTTTGAGACAGTTTTGCTCTGCATCTCAGACTGACAGTCGTTCATGCTAGCCTCAAACTCAATATCCTCCTGCCTCAGCTTCCTGAGTGCTGTATGTCTGATCCTTCCCATCTGTTCTTGCCTTCTCTTCTGTTGAACAAGTCAGGCACAGGGTGTTTCTGCAGCTGTTTAGTCAGGAGACGTAGCCTTTGTAGTCTTCATGGCCAGTAGGCAAAGGGCTATGAGTGATCGTAGTGGGGGAGGGGAGAATGGCCATGCAGTCAGCCAGTATAGTGTCCAGCAGCCATGGATGAGCAACTGTCCCAGCCTGCCGAGTCACTTTGTCCTGCAGACAAGTTGCAGGAGCAGTAATCCCCTCCCTGTTTCATTACCAG
Seq C2 exon
GGACTTAGCACCAAAAGACCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
NA
C2:
PF0016825=C2=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]