GgaINT0129971 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4137963-4138253:-
Coord C1 exon
chr19:4138162-4138253
Coord A exon
chr19:4138087-4138161
Coord C2 exon
chr19:4137963-4138086
Length
75 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGCTCTCCGTGTTCCTACAGGCG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGTGGTCAGCGTGCAGGGGCTGCAGGCAGCCGGGCACCAGGAGGGCTGGTTCAGGCTGCAGCCGGACACGGCCAAGCCCAGGGAGGATAG
Seq A exon
GTGAGTGCTTTGGGGTGTTCCAGAGGGATGTGCCGTGGGGCGCGTGGTCTGGATCTGCTCTCCGTGTTCCTACAG
Seq C2 exon
GCGCCGGGGCAGCCTGGGCTCACTGCAGCTGCAAGTGAGGCTGCGGGATGAGACAGTGCTGCCCTCCCACTGCTACCAGCCCTTGGTCCAGCTGCTGTGCCAGGAGGTGAAGGCAGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAGGGCTGGTTCAG
R:
CCCTGCCTTCACCTCCTGG
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]