MmuINT0132009 @ mm10
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136098688-136101019:+
Coord C1 exon
chr5:136098688-136098779
Coord A exon
chr5:136098780-136100901
Coord C2 exon
chr5:136100902-136101019
Length
2122 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCACAAGCTGCCCATTGCAGGGG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GTGGCGGTCAATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCAA
Seq A exon
GTGAGTGCTACCAGCGGGCCCTGGGGTGTGTGCTGAGGAAGAAAGGTCAAGTGTCCCCCGGTCCCAGCACCGTTCTCGGCCAGGTGGGAGCTTCCTGCTCCCTTTTTACGTTCTTGTCCTCTGAGCTCAATGTTGTGCACGAATCTCCTGTTTTTGTATGTTCTGGCATTTTCTAGAACGTGTCCTCAGATCCGTTCCTTTTAAAGGGCTTCCTTGCAGAAGGAAGGCTTTCTTCCCTAGTCCCTAGAGAGAGTGCCCTGGAGCCATGACTCTGAACCTCAAGAGTCTCCAAAAACAGAGGTGCAGGGCAAGGTTGGGGTACAGAGGTGCAGGGCAAGGTTGGGGTACAGAGGTGCAGGGCAAGGTTGGGGTGTACCAGTTGAAGAGTGCCTGCCCTGTGGGCACAAGGCCACAGGCTGGGTTTCCAGCACCACAGAGGTGAAACTCAGATAAGTGCCAGCACACCTTGGGCTCAAGATGGCTCAGCAGGTCATCTAGACTCTCTAGCTATGCAGTGTGGCCCGTGCACGTGGACACATGGAGTGAAGCAGAGTGGCACATGCTTGTAACTCCCATTTTAAAATTGGAGGTGCCAAGAAGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAATTGGAGGCTAGTTGGGTTGATAAAGCCAGACCCTATCTCAAAATTAAATTTTAGATAGTTAATTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTCTCATGTAGCCCAGGCTACTCTCCCCCTCCCCTCCCCTGCTGGATTATGTGCCACACTGGGGACCAAACCCAAGGATTTATTAAGCTAGGCAAGCACTCCCACTGAGCTCCATCTCTCTCTCTCACACACACACACACACACACACACCGGTAGAGGAGATTCTTTTAATGGAAGAATGCAAGCCAGGCGAGGTGGTTCACACTTGTAATCCAGGCCCTAGGGAAGCTGAGTCAGGTGACTGCAGAGTTCCAGGCTAGCCTGAATCTACAAGGTGTGATCTGGTCTCAAAGAGGAAAAAAAGATTGCTGAGAATTCAAGCCACCACATTGTTACTAAAAACTTGCGAATGTAACTTGGTGTCTTGTCTTTTCTGCTCAGTCTGGTAGCCCCATCTAGAAAATTCTTTGGCTTGTTTTGGTCTCCCTCACACCCCTTGGTAGACTGAGCTTTGGATCTCTGAAGAAGGTCCCACATCCTTCGTCTGTGTTCTTCTAGGCCAAGGGTATGCCCAGCCTATGACATCTGTGCAGCAGTCTAGGACAGTCTGATGGCTTCAGCACTTGGGGTGTGTGCCGGCAGCGGCTTCCTCAGCATGCTCTGTGCGGAGGATGATGGGAGCCACTAAACAGTAACTTAGTCAAGGTCTCCAAGGGCAGTCGCAGGGAGAAATCTTTTTTTTTAAGTTATTTTATTTATATGTAAGTACACTGTAGTTGCCTTCTGACACACCAGAAGAGGGCATCAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTCGGGACCTTTAGAAGAGCAATCAGTGCTCTTAATTGCTGAGCCCCACAGTAAGAAATCTTGGTGGCTACATTTACTATGTATGGCATGAGGCCTAGCTTACTTGAGCCTGAATTTCCCTGTTAGCTTAACAATTTGCTTCCCAGGTAAGGCACAGGGGTGACATGCCATGGTCCAGAGTTGATGGTTTGGGATATGGGAGCTTGGGATGCACAAGTGGAATCCCGTGGAGCAAGGAGACATAGTGGAACTAGCTTTGGAAACCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGTGCGCGTAACAGGTCGGGAAGTGTCTTCCCGACAGGGACACAGAAAGGCCCAGTGGGAGTGGAGTAGCTGACGGATGTAAGCAGAGAGAATGCACTGCTAATCTCCAAGGCCTGAGCCTTCGTGAGTGGGCCAGGCCCAGGGAACTGAGGTCCCTGGTGGAGACATCACAAGCTGCCCATTGCAG
Seq C2 exon
GGGCAACCTGGGCTCCTTGCAGTTGGAAGTGCGGCTGCGGGACGAGACAGTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952:ENSMUST00000042135:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types