RnoINT0124476 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23608076-23610083:-
Coord C1 exon
chr12:23609992-23610083
Coord A exon
chr12:23608194-23609991
Coord C2 exon
chr12:23608076-23608193
Length
1798 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCACAGTCTGCCCTTTCCAGGGG
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTGGTAGTCAATGTCCAGACACTGTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCCGACCAGTCCAAAAGCCGTCAAGGCAA
Seq A exon
GTGAGTGTTACCAGCGGGCCCTGGGGTGTGTGCTGAGAAAGAAAGGTCAGGGGTCAAGAGTACACAGCTCACGTGTCCCTCAGCTTTTGTCCACTGTGCCAGCACCTTCCGCAGCCAGGTGGGCACTTCCTGCTTCCTTTTTATATTCTTGTCCTCTGAGCTAAAAGTTCTGCATGGATCTCCTGGTTTTGAATGTTCTGGCACTTTCTAGAACATGTCCTCAGATCCTTTCCCTTCAAAGGGCTTCCTTGCAGATCTCTAGTCCTTAGAGAGAGTGCCTCGGAGCCATGACTCTGAGCCCTCTTTCCCCAAGAGTCTCCAAAATAGAGGTGCCATAAGAAAGTCAGGGTTGGGGGTATCACCAGTGTAGAGCGCCTGCCCGTAGGCACGGGTTTGATCTCCAGCACCACGAAGGTAAAAATCAGATAAGCGCTAGAACACCTCGTGCTATAAAGATGGCTCAGCAGTCATGTAGTCATGGGAGTCTTGTAGACTCTTGCTAGCAACGCACTGTGGCACGTGCGAGTACACATGAAGGGGACGCCTGGAGTCCAGCGGAGTGACGTACACTTGTAACCCATCTTAAAATTGAAGGCCAGGGTTGGGGATTTAGCTCAGTGGTACAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCTGAAAAAAAGAAAAAAAAAATCGAAGGCCAGTTGGGTTGATAAAGCCAGACCCTATCTCGAAACTAAATTTCAGATAAATAGTTAATTGTTTTTGAGGCAGGGTCTCATGTAGCTCAGGCTGTCCCCCCGACTCCTGTGCAGGATTCTATGCCACACTGGGGGATCCAACCCAAGGATTTATTATGCTAGGCAAGTACTCCGACGGAGCTCCATCTGAGCTCTGGTGGATATTTAAATGTAAGAGTGCAGGCCAGATAGGGTGGTTCACACTTGTAACCCTGGCACTTGAGGAACTGAGTCAGGGGACTGCAGAGTTCTGGGCTAGCCTGACTCTACATGGTGTGGCCTTGTCTCGAAGAAGAAGAAAGATCACTGAGAATTCAAGCCCTATTGTTACTAAACACTTGATAACTTCACTTGGTGTCTTGTCCTTTCTGCTCAATCTGGTGGCGCTATCTAGAAAACACTTTGGCTTGATTTGGTCTCCCTCACACCCCATGAGTCTGGATCCCTGAAGAACACATTCTTCTCTGGCCAAGGCCAGGTGGCCAGCGGCATGGCCAGCCCATGGCATCTGCTTAGCCGTCTAGGACAGACTCGATGGCTTCAGCACATGGATGTGTGCTGGGCAGCGTGGCTTCCTCCATGTGCTACGTGTGGAGGATAGTGGGAGCTGTAATGAACAGTAAGCCTTAGTCAGTGCCTCTCCAAGGGAGCCACAGTAAGAAATCTTAGTGGTCACATTTACCACGGCGTGTTGCCTAACTTACCTGAGCCTGAATTTCTCTGTTAGTTAACAATGTGCATCCTGGGTAACGCACACGGGTGAAATGGCCGCGTTCCAGAGTTGATGATTTAGAGTATGTGAACTTGGCAGGCACAAGTGGAATCCCACAGTTCCCTGGAGGCTTTGAAAAACGATGGTCGTTCGTTGGGGAATAGGGCAAGAAGGGTCTTCCAGACACAGAAAGGCCAAGCTGGAGCGAGTGCTTTGCAGAGTGGCTGGGGCGATGTAAGCGAAGAGAGTGTGTTGCTAATCTCAAAGGAGAAAGCATGAGCCTTCGTGAGTGGCCGTGGCCCAGGGAAACTCGGTCCCTGGTGGAGCCATCACAGTCTGCCCTTTCCAG
Seq C2 exon
GGGCAACCTGGGCTCCTTGCAGTTGGAGGTGCGGCTGCGGGATGAGACAGTGCTGCCGTCTGTCTACTACCAGCCTCTGGTACAGCTGCTGTGCCAGGAGGTGAAGCTGGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTAGTCAATGTCCAGACACT
R:
GTGCCCAGCTTCACCTCCT
Band lengths:
206-2004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]