GgaINT0130579 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8081748-8082570:-
Coord C1 exon
chr19:8082393-8082570
Coord A exon
chr19:8081878-8082392
Coord C2 exon
chr19:8081748-8081877
Length
515 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GGCTCGTATCCCCAACACAGCTA
3' ss Score
3.15
Exon sequences
Seq C1 exon
CACTTCATTTGCAGGTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
Seq A exon
GTAAGAGTGCCGCTTCCTCAGCTAACAGTTCTGGAATACACTTGTGCCTTGTGTTACCAGTATTCTCACCACTTCAGCATGGATTACAGCTTTCCCTGCTTTTCACTGGCAGCTTCAGCTACTCTGACAGGCCTGAACAGATCCTTTTTTGTCAAATACAAAGAAGGCACTTTGCACTTTTACACTGAAGGGTGTAGTTATTTAAAAAAACAAACATGCAAAACAAAACAACAAAAAAACCAACTCTCATTCAGTAGAGCTAGTTTTAAGCCAGCTGCTACTGTGACTTCAGGAGTGTGTTTTCCCCCCCACAACACTTTTTCCCCATCAAATACATCTGCTTTCTACCTTAACCTTACATATTATATATAGCTATATAATAAGCATTAATGACATGCTGTGACCTCTAAAACATAAGCAGTCTTGGGACCTGACAAGCAACAAATCATTGTAGAAGGGTTAAGAACACAGCTCTGTCCCTGACTATTAACTGCAGGCTCGTATCCCCAACACAG
Seq C2 exon
CTAGAGCAACTTGAAGCTAGAAGAGCAGAAGTGTTAAACAAGAAAGCATTTTGCATTCAGTGTTTCTGGAGGAGATTTAAACAGAAGAAACTTGCAAAGGAGAGAAGGTGTGCAACCCTCATCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(7.3=92.7)
A:
NA
C2:
PF0061222=IQ=PU(42.9=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCATTTGCAGGTGAGACTG
R:
CTTGGATGAGGGTTGCACACC
Band lengths:
305-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]