DreINT0014905 @ danRer10
Intron Retention
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3630657-3633049:-
Coord C1 exon
chr5:3632910-3633049
Coord A exon
chr5:3630787-3632909
Coord C2 exon
chr5:3630657-3630786
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
TCTTATGATGTGTTGTGCAGTTG
3' ss Score
6.19
Exon sequences
Seq C1 exon
GCCCTGAGATGGGATCAGTTGTAGAAGATGTGCTCAGTGTGGTCATCAAAAAACACTCCCCAAACTCCACCTTCAGTCCTGATGACAACAACAACATGGTTCATTGTGGGAGAACAAAAGTCTTCCTCACGCACTCCCTG
Seq A exon
GTAAAGTGTGCTCTTATGATTGCGATTCACTTTGTAAAATGCATTTTTGAGGCAGCTGTAGAAAGATTGAAGGAATACTTCAATACCTAGTTTAAATACTTCAATGCTTGTCTTCAATACATCTATCAATTGAATTGTGACATTTTTGATGAAATGTAAAAGCTTACCCTTGCTGTCTATGAAGGCTCAGAAAGCTCTCCGATTATGGCTGAGATGATTTTTTTAACCCTCAGATTTCAGATTTTCAGATAAATGCAAAATATTGTGAAAATTAACTGTAAAATTGTCCAGATAAAGTTCTTAGGAATACATATTACTAATCAAATGCTGGTGGCTGATTTTTGCCCCATTGACTTTCATTATAATTACAATTTTTGATTGCAAAGCCATGACAGCATACAATTATGCATTCTTATGTTTAAATTGTTTATTGTGGAAAAAAACAAACACTGTATCAGTACAAATAGTTACATATCATTATCTTTGTTCTTTTAGTTTTTTACAAAAGAGAATTAAAAAATAATTATATATATATATTATAAAAAATGTATATAATTAATATATATTAATTATATTTTAAAAATAAAATTAAATATAAATTATATTTAATTATATATATATATATATATATATATATATATATATATATAAATGTATAAATGTAAAAAATATATATATATATATTTAAAAATAAATGTGTATATATAATTAAAAAATTTATATATATATATATATATATATATATATATATATATATATAATGTATATAATTAATATATATTAATTATATTTTAAAAATAAAATTAAATATAAATTATATTTAATTATATATATATATATATATATATATATATATATATATATATATATATATATATAAATGTAAAAATATCTAGATATATAATTAAAAATAAATGTATATATAATTAAAAAAATTGTATGTATATATATATGTGTGTGTATATATATATATGTATGTATATATATATATATATATATATATAATTACAAAAATGTTTTATTATGTTTTATATATATATATAATTATATATATAATAAATTAATTAAAATTTAATTTATATATATATTTATTTATATATATATATATAATTAATTAAAATTATTTAATTGTAATAATTAAAAAATGATTACAAGAGTAATAAGTGTACAGACAATTACCACCAAATATCACAATCAAATGTTCAGATTCATTGTCAATGTTGAAAGTAAATATTTACAATTAAACAGTATAAATATTAATAATAATATTAGATAAAACAAACAAATTAAATTACTACGAAATAAATTAAAAAGGGAAGCAGAGTGCATCTATTAACTGGAGGGCAATACCTAGAGTTAAAGTAAGTTATAAAACAATGCCACTTTTTAAAGAAATGAGTTTTCCCAGAGCATCTAACCTTTGCCAACTTAAGAAAATGCATGGTATCTACAAGCCATTGGGATGTAGTTGGAGGCTTATTTGATTTCCAGTGAAGTAGTATACGAGATTGTTGCTGGTTTTCCCTGTTGGGAAGAGGTCAAATTTATACTTTCTTACTGTTGATCATCAATTAGCAGCATTAACCCTTTAAATGGGCCTGTGCAAAAACATTTCTAGCTTTTATATGGAGTTTGATGAAGTAAAACAGCAGATTATATTGTGTGTGGGTGCAGAAATACACTCACTGTGTTTACTATGCTCTGAGAGTTGAGCTGCTTATTTGGATTTTCTCAGACAAATCAAAGTAAATAGCAAAGATCTCAAACACAAACAGACACACACACACTAGACTCTATATAACTCCATATTAAAGTCAGAAACTAAGCTTCTTTTGCACTACAACTGATGATCAACAGTAAAAATGACACGTTTGACCTCTTTCCAACAGGGAAAACCAGCAACAATGAAGAATGCATGATTATGTGCTGTCATGGCTTTGCGGTCAAAAAATGTGATTATAATGGAATCAATGGGACAAAAACAGCCACCAACATAACCAAAAGTGGTATATTATTTATTTAAAAGTTATTTGTGTGGTAAATATAAAGTAATGAACTTAATCACACATAGTCTGATGTGACTTCTCTGCGCGTCAGTAGTAATCTTATGATGTGTTGTGCAG
Seq C2 exon
TTGGAGATCCTGGAGGAGCACAGGAACAGAGTGCGCTCACAGAAAGCGTTCAGCATCCAGTGCTGTTGGCGAAGGCACCAACAACGCCAGCGTTTCCTCCGGACACAGGCAGCCACATGTATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761:ENSDART00000111453:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(33.6=91.5)
A:
NA
C2:
PF0061222=IQ=WD(100=45.5),PF0061222=IQ=PU(38.1=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]