GgaINT1018643 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8128122-8128944:-
Coord C1 exon
chr19:8128767-8128944
Coord A exon
chr19:8128252-8128766
Coord C2 exon
chr19:8128122-8128251
Length
515 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GGCTCGTATCCCCAACACAGCTA
3' ss Score
3.15
Exon sequences
Seq C1 exon
CACTTCATTTGCAGGTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
Seq A exon
GTAAGAGTGCCGCTTCCTCAGCTAACAGTTCTGGAATACACTTGTGCCTTGTGTTACCAGTATTCTCACCACTTCAGCATGGATTACAGCTTTCCCTGCTTTTCACTGGCAGCTTCAGCTACTCTGACAGGCCTGAACAGATCCTTTTTTGTCAAATACAAAGAAGGCACTTTGCACTTTTACACTGAAGGGTGTAGTTATTTAAAAAAACAAACATGCAAAACAAAACAACAAAAAAACCAACTCTCATTCAGTAGAGCTAGTTTTAAGCCAGCTGCTACTGTGACTTCAGGAGTGTGTTTTCCCCCCCACAACACTTTTTCCCCATCAGATACATCTGCTTTCTACCTTAACCTTACATATTATATATAGCTATATAATAAGCATTAATGACATGCTGTGACCTCTAAAACATAAGCAGTCTTGGGACCTGACAAGCAACAAATCATTGTAGAAGGGTTAAGAACACAGCTCTGTCCCTGACTATTAACTGCAGGCTCGTATCCCCAACACAG
Seq C2 exon
CTAGAGCAACTTGAAGCTAGAAGAGCAGAAGTGTTAAACAAGAAAGCATTTTGCATTCAGTGTTTCTGGAGGAGATTTAAACAGAAGAAACTTGCAAAGGAGAGAAGGTGTGCAACCCTCATCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(8.0=93.3)
A:
NA
C2:
PF0061222=IQ=PU(42.9=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCATTTGCAGGTGAGACTG
R:
CTTGGATGAGGGTTGCACACC
Band lengths:
305-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]