BtaINT0097868 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13162239-13162581:-
Coord C1 exon
chr19:13162466-13162581
Coord A exon
chr19:13162369-13162465
Coord C2 exon
chr19:13162239-13162368
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
AGCGGATGCCCTTCCCCCAGCTC
3' ss Score
4.48
Exon sequences
Seq C1 exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
Seq A exon
GTAAGCGGGCCTGGGGTGAGGAGCTGGCGGCCACGGGCCTGGGTGGAGGACGGGGAGCACGGGCGGCTGAGGACCTCAGCGGATGCCCTTCCCCCAG
Seq C2 exon
CTCGAGCTCCTGGAGCGTGGGCGTGCCCAGGTGCTGGAGCAGTGTGCCCGCCACATCCAGCGTGGCTGGAGGAGACACCGGTGCCGCACGCAGGCCAGGCGGAGGCGGGCAGCTGTGCTCATCCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.9=87.2)
A:
NA
C2:
PF0061222=IQ=PU(42.9=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGGCAGGACCAAG
R:
GCCTGGATGAGCACAGCTG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]