GgaINT0131674 @ galGal3
Intron Retention
Gene
ENSGALG00000002558 | ARLY1_CHICK
Description
NA
Coordinates
chr19:4915423-4915697:-
Coord C1 exon
chr19:4915620-4915697
Coord A exon
chr19:4915476-4915619
Coord C2 exon
chr19:4915423-4915475
Length
144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTTCTTTCTTCCCTGGCAGTGG
3' ss Score
10.61
Exon sequences
Seq C1 exon
CCATGCTGTTGCACTGACCCGTGATTCTGAGCGCCTGGGAGAGGTGAAGAAAAGGATCACTGTCTTGCCTCTGGGAAG
Seq A exon
GTAATGACTACTTTCTGTGTAATCCCTGTGTATAACTTCATTATCTAACGTCTTGAGGGATACCTTCTCTGCTTAATAAAGATCAATTTTGAATGGAGTTTGCAAGATAATATATGTGACTTCTCTTTCTTTCTTCCCTGGCAG
Seq C2 exon
TGGTGCTCTGGCTGGCAACCCACTGGAAATTGATAGAGAGCTTCTGCGTAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558:ENSGALT00000039936:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCACTGACCCGTGATTCT
R:
CGCTACGCAGAAGCTCTCTAT
Band lengths:
124-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]