HsaINT0013369 @ hg19
Intron Retention
Gene
ENSG00000126522 | ASL
Description
argininosuccinate lyase [Source:HGNC Symbol;Acc:746]
Coordinates
chr7:65551731-65552373:+
Coord C1 exon
chr7:65551731-65551808
Coord A exon
chr7:65551809-65552320
Coord C2 exon
chr7:65552321-65552373
Length
512 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ATGAATCCCTGTCCCTGCAGTGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CCACGCCGTGGCACTGACCCGAGACTCTGAGCGGCTGCTGGAGGTGCGGAAGCGGATCAATGTCCTGCCCCTGGGGAG
Seq A exon
GTGGGTGAGGCTCCAGTGCCCCGAGGGCCTGGTGGGGGTGGCTGCTGCATAGCCTTAGGGATTGACAGAGCTGGGAAGTGCAGAGTGGGACAGAAAACCGCCTTATCTGCTCAGCGGGGGACTCTGCATGGAGCCCCAGCTCTCGCTAAGGTGACGACCAAGCCATTGAATGTGTCTGAGCAGGGCCAGAGCCCTCCAGCAAGGCTCCTGGCAAGCCCAGCCTGCTGCCCTCAGCCTGACATGTGGGAACATGTGTCAGGAGACAAGTGTCCTGCACCCAGGGTGACTTAGTGCTTGGGGACAAGTGTTTTGTGGACACTTGGGGACAAGTATTCTGTACCCAAGGAGACTGGGCCAGGGAAGAGGCTAAGCGCCAGGTGGTTGCCCTGGCAACCAGGACTTGGTTCTCTGTGTGTGCGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGGCTGCCTGCCAGGAGCCCTGGTCACCATGAATCCCTGTCCCTGCAG
Seq C2 exon
TGGGGCCATTGCAGGCAATCCCCTGGGTGTGGACCGAGAGCTGCTCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126522-ASL:NM_000048:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
NA
C2:
PF0020615=Lyase_1=PD(0.1=0.0),PF0020615=Lyase_1=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)