MmuINT0019818 @ mm10
Intron Retention
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130014679-130016174:-
Coord C1 exon
chr5:130016097-130016174
Coord A exon
chr5:130014732-130016096
Coord C2 exon
chr5:130014679-130014731
Length
1365 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGAACCCCGTCTCTCTACAGTGG
3' ss Score
8.52
Exon sequences
Seq C1 exon
CCACGCTGTTGCGCTGACACGAGATTCAGAGAGACTCTTGGAGGTGCAGAAGCGGATCAATGTCTTGCCACTGGGGAG
Seq A exon
GTAAGGCATTATTAACCCTCGCTCGGTGTCCCCTTATGGAAGCTGAGGGCAAATTGCTACCCAATCAAGACTGAGGAAAGCGTGGAGATTAGAGGGAGGGGCCTATGAGACCCTGCCCCTTCCTCAGGGTCTATATATAGACAGTCGTGGTTGCTAGGGGACGGACATTTCTTCATTGGTTAAGTTGCCAGTGCTCCTATTGGCAACCACTCACGCATTCGCCTATTAGCAGCCCTAGTGAAACTCACTGGGTCACCAACAAAGACATGAAATGTTGAGAAAAGGAAGGACTCATCAGAGTAGTAAGAGGACAAGAGAGGGTAATGGAGGAGCAAATATGATTAAAATACATTCCGCGTGTGTATGAAAATGGCATAATGAAACCAGATTTGTATAATATACATGCTAATTGAAAAGGTTAGGGGCTGGGGAGATGGCTCAGCGGTTAAGCGCACTGACTGCTCTTCCAGAGTCCTGAGTTCAATTCCCAGCCACCACATGGTGGCTCCCAACCATCTGTAATGGGATCCAGTGCCCTCTTCTGGTGCGTCTGAAGGTGGCTACAGTGTACTCATATACATAAAATAAATAAATAAATCTACAGTGTACTCATATACATAAAATAAATAAATAAATCTTTTTTTTTAAAGAAAACTTTAGGGTGGGCTGGAGAGATGGCTCAGTGTTTAAGGGCCGCGCTGCTCTTCCAGAGGACTAAAGTTCAGTTCCCAGCACCCACCCTGGGCAGAACATAACCCAGCCATAACTTCAGCTCCAGGAACTCCAGTGCCCCCTTCTGGCCTCCATGGGCACTGCACACATGTGACAAACATTCACACATCCATACACACACACACACACATACACACACACACAAGAATAATAAAAACAGGTCTTTAAAAATAAAACAAAACTGTAAAGGCTGGAGAGATGGCTAAGAACACCAGCTGCTTTCACAGAAGTCCCAGGTTTGGTTCCCGATGCTCACATTGGGTGCTCACAACTGCCTCTAACATCAGTTCCTGGGGCTCTGAGGTCCTCTTCTGGACTCTGTGGACACCTACGTGCACTTGGTTCACATACAGACAAGAAGGCATGCACACACCTACACACAATATTTTTAATAGAAAAGAGTTAGACCCTGCTCTGCCTTTCAGATCTCTAACATGGGGATAACCAAACAAGAAAAACGCTGAAAGCCCAGCCAGCTTCCCATCTCGCACCATGTTCCCTGCATGGTGAAACTTTTTTGGGCCTTAAGGTGGACAGGCCAGGAAAGCAGCTGAGCAACCAAGGTTTGCTTCTGAGTGTTGCATGTGATTGGTACCCAGAGCCTCAACCTCTGTGAACCCCGTCTCTCTACAG
Seq C2 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGCTACTCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533:ENSMUST00000161094:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.3=100)
A:
NA
C2:
PF0020615=Lyase_1=PU(13.0=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types