RnoINT0021929 @ rn6
Intron Retention
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30173792-30175033:+
Coord C1 exon
chr12:30173792-30173869
Coord A exon
chr12:30173870-30174980
Coord C2 exon
chr12:30174981-30175033
Length
1111 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTGAACCCTTGTCTCTACAGTGG
3' ss Score
8.2
Exon sequences
Seq C1 exon
TCACGCCGTTGCGCTGACACGAGATTTAGAGAGACTGAAGGAGGTGCAGAAGCGGATCAATGTCCTGCCACTGGGCAG
Seq A exon
GTAAGGCAGTTGTCCTCTGTGTCCCCCAAGGCCTGATGGAAGCTGAGGGCGTATTGCTACTCAATCAACAAGGCTGAGGAGAGCATGGCGATTAGAGGGGAGGGGCTTGTGAGGCCCTGCCCCTTCCTCAGGGTCTATATTAGACAGTCGTGGTTGCTAGGGGAGGGGCATTTCTTCAGTGGTTAAGTTGACTGTGCTCATGGGCCTGTTAGCAACCTCAGTGACACTCACTGGGTCACCGACAAAGACATGAAATATGGGAGTTGAGAAGAAGGACTCCTCAAGGTAGGAAGAAGACAAGAGAGGGTAATGGAAGAGCGAATATGATTAAAATACATCCTACATGTGTATGTAAATGCCATAATGAAGTCATATGTATCATATACACACACGCTAATTAAAAACTTTAGTGTGGGCCAGAGAGACAGCTCAGTGGTTAAGAACACTTGCTGCTCTTCCAAACGACTGAAGTTCAATTCCCAACGCCCATACTGGGCGGTGTACAACCTACCTGTAACTCCAGCTCCAGGAAATCCAGCGCCCCCTTCTGTCCTCCACAGGCACTGCACACGTGTGGCATACACTCACACATGCACATATACACACACATAAGTAAAAATAATAAAAACAAGTCTTTGAAAATAAAGCAAAACCCTAAAGCAAAGCCAAAAGCACCGGCTGCTTTCACGGAAGACCCAGGTTCAGTTCCCAGTGCTCACGCTGGGTGGCTCACAAGTGCCTCTAACTCCAGTTCCACGGGCTCCGAGGTCCTCTTCTGGCCTCTGTGGATGCCTAAATGTAGACATACAGACAAGAAAGCACACGCACACACACACACACACACACACACACACACACACACACACACACTATTTTTAATAGAAAAGAACTAGACCCCACTCTACCTTTCAGACATGGAGATAACCAAACAAGAAAAATGCTGGCACGCCAGCCAGCTTCCCAGCCCACACCATGTTCCATGCATGGTGAAAGTCTTTGGGCCTTCAGGTGACCAGGCCAAGAAAAGGGCTAAGAAACTAAGGCTTGCTTCTGGGGGTTGCATGTGTATGGTGCCCAGAACCTCAGTCTCTGTGAACCCTTGTCTCTACAG
Seq C2 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGTTCCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903:ENSRNOT00000001211:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]