GgaINT0132586 @ galGal3
Intron Retention
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4892229-4893190:-
Coord C1 exon
chr19:4893012-4893190
Coord A exon
chr19:4892376-4893011
Coord C2 exon
chr19:4892229-4892375
Length
636 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
TAGTCTTGTTTCCTTTTCAGTGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATTCGTGGCAAAGGCCTGGACTGGGCACTGATCGTTAAGGACTTCAACCTGCTGCGCTGGTTGGGGGCAAACTCCTTCCGTACCAGCCACTACCCCTATGCTGAGGAGATCATGGACCTGTGTGACACCTACGGCATCGTGGTGATTGATGAGTGCCCGGGAGTGGGGATTAAGATGCC
Seq A exon
GTAAGCAAAGCACAAAGCACCATTCCCCTCATGTCTTTCCCTCCCACAGCTTCCCCCTCCCATCCTGAAGCTCGTGACACCCTGATAATGAAGGCACTTTGCTCTGTTTAGAAATCAGCCTGTCGCGTTTCAAAGCCTCCCCCAGTGCCACGTCTGCCCGCTGAGGTTGGGCAACCAGAGGGCGTTCTGCCACATGGCTGTTGTGTCATCAGATCTGGCTCCATTAGTGAGCCCAAACCATGGCCCTGAACCGTGCAGCAGCCTTTGGGGAAATAAGGCAGAAGCTACATTCAGTTTCAATGTTCATCAGTGCTTACATACCACCGAGGCTTCAGTTACCCATTCCATTTGCATGTAGAATCATAGAATCATTAAGATTGGAAAAGACCTCTAAGATGATCCAGTCCAACTGTCCAATTATCACCAATGTTGCCCATTGACCACATCCCTCAGTGCCACATCTCCATGGTTTCAGAACACCTCCAGGGACAGGGACTCCCCCACCTCCCTGGGCAGCTGTGCCACTGCAGCACTGCTCTTTTGGAGAAGGAATTGTTCCTGATATCCAATCTCAACCTCCCCTGGCACAGCTTACCTGTGATTTTATATCCTTACCTAGTCTTGTTTCCTTTTCAG
Seq C2 exon
TGAGAGCTTTGGGAACAAATCTCTACAGCATCATCTCGTTGTGATGGAGGAACTGATCCGCAGGGATAAGAACAGGCCCTCAGTTGTGATGTGGTCAGTAGCCAATGAGCCGGCATCAGAGCTGCCCCCAGCAGCTTACTACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542:ENSGALT00000004011:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGCCTGGACTGGG
R:
TGAAGTAGTAAGCTGCTGGGG
Band lengths:
318-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]