RnoINT0068791 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30207078-30207501:+
Coord C1 exon
chr12:30207078-30207256
Coord A exon
chr12:30207257-30207354
Coord C2 exon
chr12:30207355-30207501
Length
98 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TTTCCTCTCTTGCTCCACAGCCA
3' ss Score
11.54
Exon sequences
Seq C1 exon
ATCCGAGGGAGAGGCTTCGACTGGCCTCTGCTGATAAAGGATTTCAACCTCCTCCGTTGGCTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCGGAGGAGGTACTTCAGCTCTGTGACCGATATGGAATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATCGTGCTGCC
Seq A exon
GTGAGTGTCCGCCCCTTCGCTGCCCTCGCTGCCCCCACTGCCCAGCTTCCCAGCTCTTCTTAGAGTCTTTGGTGACCCTTTCCTCTCTTGCTCCACAG
Seq C2 exon
CCAGAGTTTTGGCAACGTGTCTCTTCGGCACCACCTAGAGGTGATGGACGAGCTGGTGCGCAGGGACAAAAATCACCCTGCGGTCGTGATGTGGTCTGTGGCCAATGAGCCTGTCTCTTCTCTGAAACCTGCCGGATATTACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAACCTCCTCCGTTGGC
R:
CTCTAGGTGGTGCCGAAGAGA
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]