GgaINT0132888 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:17032-18218:+
Coord C1 exon
chr19:17032-17340
Coord A exon
chr19:17341-18014
Coord C2 exon
chr19:18015-18218
Length
674 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
CCCACCACGTTGCCTTGCAGGAC
3' ss Score
8.59
Exon sequences
Seq C1 exon
GCGTCTCTCGAGCATGAGGAGGGGAAGATCCTGAGGGCCCAGCTAGAGTTTAATCAAGTGAAGGCTGACTATGAGCGCAAGCTTGCTGAGAAGGATGAGGAGATAGAGCAATCCAAGCGTAACCACCTGCGGGTGGTGGACTCACTGCAGACCTCACTGGATGCTGAGACACGAAGCCGAAATGAGGCCTTGAGGCTGAAGAAGAAGATGGAGGGTGACCTCAATGAGATGGAGATCCAGCTGAGCCATGCCAACCGTACGGCAGCTGAGGCCCAGAAGCAAGTCAAGGCACTGCAGGGCTATCTCAAG
Seq A exon
GTACCCATAGGACTGCTGACCCATCAGGAATTAATGGGCCAAGATGGCCATTTGGACATTAGGTGGCACAAGTTTGCTATTGGGTGTCAACATGATGGGTTTTAGGTTGCCACTGGGTGACCATTAGCTGGCTGATGGGTGGTCATTCAGTGGCTATTGGGAACCTATTGTGTGACCATTGGGTGTCTGTTGGATATTCATTTACTGGCTGATGGATGGCCATTGGGTAGCTGTTGGCTGTCCATTGGGTGGAAACTAAGATGCCATTGGGTAACCACTAAGTGGCTTTTGAGTGGTTATTGGCTGATCACTGGGTTGCTAATGGGTGGGCATTTGCTAGCTGATGGACAGCCATTGGTTGGAATTTGGCTTGCCTGCTGGGTGGTCATTGGGAAGCCCAGTGTGGCTGTTGGATGCCTGTTGAGTACCTGTTGGGTAGCCACTGATTGTCTATTGAGTAGCTGTTGAGTGGCTACTGGGTGGCTATCCATGGGAGGCCATTGTATGCTAGTTTGGTGGCCACTGAGTGCCAACTGGGCATCTATTGTGTGATCAGCGGGTGATCACTGCATGGCAATTGGGTGGCCATTGGGTGGCCCAAGATGGCTGTTGGGTGCATGCTCACCCAATTCCCACCCCCCTACTCATGCTCCTCCCACCACGTTGCCTTGCAG
Seq C2 exon
GACACCCAATTACAGCTGGATGATGTTGTGAGAGCTAATGAGGACCTGAAAGAGAACATTGCTATTGTGGAGCGGAGGAACAACCTCCTCCAGTCAGAGCTAGAGGAGCTGCGGGCTATGGTGGAGCAGAGCGAGCGGGCTCGCAAATTGGCTGAGCAGGAACTGATTGAGGCCAGTGAGCGGGTCCAGCTTCTCCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.2=24.3),PF087025=Fib_alpha=PU(40.2=39.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF087025=Fib_alpha=PD(57.8=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCAGACCTCACTGGAT
R:
GGCCTCAATCAGTTCCTGCTC
Band lengths:
342-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]