RnoINT0096517 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33610716-33611624:-
Coord C1 exon
chr15:33611316-33611624
Coord A exon
chr15:33610920-33611315
Coord C2 exon
chr15:33610716-33610919
Length
396 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCATCATACTTTCCTCATAGGAC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GCCTCCCTGGAGCATGAGGAGGGCAAGATCCTCCGAGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATCGAAAGGAAGCTGGCAGAGAAGGACGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGGTGGTGGACTCCCTGCAGACCTCCCTGGATGCCGAGACGCGCAGCCGCAACGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAATGAGATGGAGATCCAGCTCAGTCAGGCCAATAGAATAGCCTCAGAGGCCCAGAAGCACTTGAAGAACGCCCAAGCCCACTTGAAG
Seq A exon
GTAACAGGATCCAGGCGTCTAGACGGTGGTGAGTCGGAGTATGTACAGTGCCAGAAAGACGAAAAGGTCCACAACCACACCTCTCTGAGTATACACTATCTTGTCTGATCTTGGAAGCTAAGAGGGCTGGGCCTGGTTAACGCTTGAAAAGGAGATAGTAACGGACAGGGAATAACTGGGCTAACATAAATATGAGAAAGTGGGAACTACCTACCTCGTGCGTTTGTAGGTGTGAGGAACAGTGCACTCTGGACAAGAGAGTAGGTAATGTGACAGGTGTTTATCTTCCTGATGACAAAAGGCTGTTGGGTGGGATCGGGTGAGGTGTGCCAGACCCAAAATGGAAGGTCTGTTGGCACGCGGTCTAGGCCCTTTATCATCATACTTTCCTCATAG
Seq C2 exon
GACACCCAGCTCCAGCTGGATGACGCAGTCCGTGCCAATGACGACCTGAAGGAGAACATCGCCATCGTGGAGCGGCGCAACACCCTGCTGCAGGCGGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACAGAGCGGTCTCGGAAGCTGGCAGAGCAGGAGCTGATCGAGACCAGCGAGCGGGTGCAGCTGCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.709 A=NA C2=0.426
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGAGGAGGGCAAGATC
R:
CTCCTTCAGGTCGTCATTGGC
Band lengths:
354-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]