BtaINT0097344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21372247-21373069:+
Coord C1 exon
chr10:21372247-21372555
Coord A exon
chr10:21372556-21372865
Coord C2 exon
chr10:21372866-21373069
Length
310 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CATCACCCCATCCCTGGCAGGAC
3' ss Score
6.95
Exon sequences
Seq C1 exon
GCCTCCCTGGAGCATGAAGAGGGCAAGATCCTCCGGGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATTGAGCGGAAGCTGGTAGAGAAGGATGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGGTGGTGGACTCGCTGCAGACCTCCCTGGACGCGGAGACGCGCAGCCGCAACGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAACGAGATGGAAATCCAGCTCAGCCAGGCTAACAGGATAGCCTCAGAGGCCCAGAAGCACCTGAAAGTTGCCCAAGCCCATCTGAAG
Seq A exon
GTAAAAGAAGTGAGGGCTCTCAGAGAGGGATAAGTCAGGTTGCTCACAGGAATGGTGAAGGCCGGAGGAAAGGGTCCTGGGCTAACAAATACGAGAGCATGGGGAGCACCAACCTCCTGGATTTGGAGGCTTGAAGGAGGAGAACTGATCAGGCCCTGGAGCGTGTTTTGGACCAATCCCGCCTGTGGGCCTGGAGACCTGAACGTGTCTCCTGAGGTTAACACGAGCTTTGTGACTAAAGGGAAGGGTGTATCAGATCCCAAATGGAGGCCCTGGTAGGGGCCTTCCCACATCACCCCATCCCTGGCAG
Seq C2 exon
GACACCCAGATCCAGCTGGACGACGCGGTCCGTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCGGCGTAACAACCTGCTGCAGGCCGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACAGAGCGGTCCCGGAAGCTGGCGGAGCAGGAGCTGATCGAGACCAGCGAGCGGGTGCAGCTGCTGCACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=NA C2=0.324
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(9.7=28.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCATGAAGAGGGCAAG
R:
TCTCCTTCAGGTCGTCGTTGG
Band lengths:
358-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development