GgaINT0010729 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2586389-2586885:-
Coord C1 exon
chr20:2586693-2586885
Coord A exon
chr20:2586593-2586692
Coord C2 exon
chr20:2586389-2586592
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GACCCCACGCTGCCCGGCAGGAC
3' ss Score
4.43
Exon sequences
Seq C1 exon
GCGCAACCACCAGCGTGCCATGGACTCCATGCAGGCCACGCTGGATGCTGAGGCTCGGGCCAAGAATGAGGCTGTCCGGCTGAGGAAGAAGATGGAGGGAGACCTGAACGAGATGGAGATCCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGTTCCAGAAACTGGGCCGCCAGCTGCAGGCCCAGATCAAG
Seq A exon
GTGAGGGGGACGGGCAGACTGCTGTCCCTGTGCCACCCCCTGCTTCTCCTAGCTCTCTCTTCCTCCTTCCTGTCCCCACTGACCCCACGCTGCCCGGCAG
Seq C2 exon
GACCTGCAAATCGAGCTGGATGACACCCAGCGCCAGAATGATGATCTGAAGGAGCAGGCGGCCGCCCTGGAACGCCGCAACAACCTCCTGCTGGCGGAGGTGGAGGAGCTGCGGGCCGCCCTGGAGCAGGCTGAGAGGAGCAGGAAGCTGGCAGAGCAGGAGCTGCTGGAGGCCACTGAGAGGGTCAACCTGCTCCACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.496
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.3=100),PF131661=AAA_13=FE(32.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(20.9=98.2),PF0003816=Filament=PU(19.6=89.3),PF041569=IncA=PU(41.9=96.4),PF0017016=bZIP_1=PU(52.0=46.4),PF045827=Reo_sigmaC=PU(20.0=50.0),PF129622=DUF3851=PU(11.7=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGCTGAGTTCCAGAAAC
R:
GAGCAGGTTGACCCTCTCAGT
Band lengths:
245-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]