RnoINT0096539 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33637220-33637973:-
Coord C1 exon
chr15:33637665-33637973
Coord A exon
chr15:33637424-33637664
Coord C2 exon
chr15:33637220-33637423
Length
241 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CTCATTTTTCTGGTCCTCAGGAC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GCCTCCCTGGAGCATGAGGAGGGCAAGATCCTCCGAGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATCGAAAGGAAGCTGGCAGAGAAGGACGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGGTGGTGGACTCCCTGCAGACCTCCCTGGATGCCGAGACGCGCAGCCGCAACGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGTCATGCCAACCGCATGGCTGCTGAGGCCCAGAAACAAGTGAAGAGCCTCCAGAGTTTGCTGAAG
Seq A exon
GTACTCGGAGACTTCTGGAAACAGGAGGTCACCTCACCCAGGGAAGGGCTGGCTTCTATCAAGGCTAATTAGATGGTAGGGACACTGGCTCTCTCTCGTCATGCCATCCTTGTAAAGATGGCTGACAGGCCAACCCTGAGCCACCACAACGGACTTTTCGCCCACATTCAATTCTGTGTGACAACTTCATGAAGGCACCAGAGCCAGCTTTCAAGCTTACACTCATTTTTCTGGTCCTCAG
Seq C2 exon
GACACTCAAATCCAGCTGGATGACGCAGTCCGTGCCAATGACGACCTGAAGGAGAACATCGCCATCGTGGAGCGGCGCAACAACCTGCTGCAGGCGGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACGGAGCGGTCTCGGAAGCTGGCAGAGCAGGAGCTGATCGAGACCAGCGAGCGGGTGCAGCTGCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(9.4=28.2),PF045827=Reo_sigmaC=PD(2.0=2.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACGAGGAGATGGAGC
R:
CTCCACGATGGCGATGTTCTC
Band lengths:
293-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]