MmuINT1023817 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54973302-54974066:-
Coord C1 exon
chr14:54973758-54974066
Coord A exon
chr14:54973506-54973757
Coord C2 exon
chr14:54973302-54973505
Length
252 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CTCATTTTTCTGATCCTCAGGAC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GCCTCCCTGGAGCACGAGGAGGGCAAGATCCTCCGCGCCCAGCTAGAGTTCAACCAGATCAAGGCAGAGATTGAAAGGAAGCTGGCAGAGAAGGATGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGATGGTGGACTCCCTGCAGACCTCCCTGGATGCGGAGACACGCAGCCGCAATGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGCCATGCCAACCGTATGGCTGCTGAGGCCCAGAAACAAGTGAAGAGCCTCCAGAGTCTGCTGAAG
Seq A exon
GTACTCAGAGACTTCTGGAAACAAGAGGTTACCTCACCTAGGGAAGGGCTGGCTTCTATAAATGCTAATTAGATGGTAGACACTAATTAGAGACACTTCCTCTCTCTTGTCATACCATCGTTGTAGAGATAACTGACAGGCCAACCCAAAGCAACCACAATGGACTTTCCACCCACGCCCAATCCTGGGGGACAGCTTCATGAAGGCACCCCAGCTGGCTAACTAGCTTACACTCATTTTTCTGATCCTCAG
Seq C2 exon
GACACTCAAATCCAGCTGGATGATGCTGTCCGTGCCAATGACGACCTGAAAGAGAACATCGCCATCGTGGAACGGCGCAACAACCTGCTGCAGGCGGAGCTGGAGGAGCTTCGGGCTGTGGTGGAGCAGACGGAGCGGTCTCGGAAGCTGGCAGAGCAGGAGCTGATTGAGACCAGCGAGCGGGTGCAGCTGCTGCACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.4=34.0),PF045827=Reo_sigmaC=PD(0.7=1.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCTGGCAGAGAAGGAT
R:
GTTCCACGATGGCGATGTTCT
Band lengths:
307-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types