BtaINT0097319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21342375-21343113:+
Coord C1 exon
chr10:21342375-21342683
Coord A exon
chr10:21342684-21342909
Coord C2 exon
chr10:21342910-21343113
Length
226 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CCAACTCTCCTGATGCACAGGAC
3' ss Score
4.33
Exon sequences
Seq C1 exon
GCCTCCCTGGAACATGAGGAGGGCAAGATCCTCCGGGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATGGAGCGGAAGCTGGCAGAGAAGGACGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGGTGGTGGACTCGCTGCAGACCTCCCTGGACGCGGAGACGCGCAGCCGCAACGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGTGACCTCAACGAGATGGAAATCCAGCTCAGCCATGCCAACCGCTTGGCCGCCGAGGCCCAGAAGCAAGTCAAGAGCCTCCAGAGCTTACTGAAG
Seq A exon
GTACACGGTGACTTTTGGAAGCAGGAAGTTGCCTCATCCAGAGAGGGGCAGTGGCATCCCATCATCACAGCACCAGCTCCCTCCTGCCCCTGGGCCATCACTGACCCCTCCCACAGGCCCTGCCCGAGCCACCACCACAGGCTCACTGCAGCATCCAGTTCAGCTAACAGCCTTCTGATGTGTTGAGCTCAACTCCCTCTCTCATGCCAACTCTCCTGATGCACAG
Seq C2 exon
GACACCCAGATCCAGCTGGACGACGCTGTCCGTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCGGCGTAACAACCTGCTGCAGGCCGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACAGAGCGGTCCCGGAAGCTGGCGGAGCAGGAGCTGATCGAGACCAGCGAGCGGGTGCAGCTGCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.6=31.1),PF045827=Reo_sigmaC=PD(0.6=1.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACGAGGAGATGGAGC
R:
CTCCACGATGGCGATGTTCTC
Band lengths:
293-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development