GgaINT0010729 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2944484-2944980:-
Coord C1 exon
chr20:2944788-2944980
Coord A exon
chr20:2944688-2944787
Coord C2 exon
chr20:2944484-2944687
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GACCCCACGCTGCCCGGCAGGAC
3' ss Score
4.43
Exon sequences
Seq C1 exon
GCGCAACCACCAGCGTGCCATGGACTCCATGCAGGCCACGCTGGATGCTGAGGCTCGGGCCAAGAATGAGGCTGTCCGGCTGAGGAAGAAGATGGAGGGAGACCTGAACGAGATGGAGATCCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGTTCCAGAAACTGGGCCGCCAGCTGCAGGCCCAGATCAAG
Seq A exon
GTGAGGGGGACGGGCAGACTGCTGTCCCTGTGCCACCCCCTGCTTCTCCTAGCTCTCTCTTCCTCCTTCCTGTCCCCACTGACCCCACGCTGCCCGGCAG
Seq C2 exon
GACCTGCAAATCGAGCTGGATGACACCCAGCGCCAGAATGATGATCTGAAGGAGCAGGCGGCCGCCCTGGAACGCCGCAACAACCTCCTGCTGGCGGAGGTGGAGGAGCTGCGGGCCGCCCTGGAGCAGGCTGAGAGGAGCAGGAAGCTGGCAGAGCAGGAGCTGCTGGAGGCCACTGAGAGGGTCAACCTGCTCCACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(19.2=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGCTGAGTTCCAGAAAC
R:
GAGCAGGTTGACCCTCTCAGT
Band lengths:
245-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]