GgaINT0134318 @ galGal3
Intron Retention
Gene
ENSGALG00000003179 | ANGPTL7
Description
NA
Coordinates
chr21:4169999-4172090:+
Coord C1 exon
chr21:4169999-4170377
Coord A exon
chr21:4170378-4171986
Coord C2 exon
chr21:4171987-4172090
Length
1609 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTTTATGGTTTTGATTCAAGTAG
3' ss Score
1.36
Exon sequences
Seq C1 exon
ATGCCAGCAAGATCTACTGTTCAGCTGGCATGGCTCTGCATTATCACTGTGTCTGTTGCTGTCTATCCAGCACTGCTGCAGAAGCCTCCTAAAAGGAGGACAATCAATGGGAACGTACAGTCCAAGATGATGGGATGCTGCGATGAGATTAAAGAGCTCAAGTTGCAAGTAGCCAACCTGAGCAGAATGCTGCAGGAGCTGAGCAAGAAGCAGGAAGGTGACTGGGTGAATGTGGTCATGCAGGTGATGGAGCTGGAAGGAAGCACCAAGCAGATGGAGTCCCGCCTCATTGATGCTGAGAGCAAGTACTCCGAAATGAACAACCAGATAGATATCATGCAACTCCAGGCAGCTCAGACGGTCACGCAAACTTCAGCTG
Seq A exon
GTAAGGAGGGAGTCTCCAAGCTCCCAGCTCCACATCTTAATGCACAAAATGAATTAATGATTAGTTCTTAATGCTAGCATGTCCCACTAACGTGCTTATCCAGTCTGCGTACTGAATACGTGTGCTTAAAACACTTCTGTAGGCAGGTGATCCTCAAGAAAAAAGCAATTTGACTTCATGTCAAAAGTCCAAAGATCCAGCTGTATTTTAATACCTGCATGTTTGTTGCCAGAGAGTGGAAAAACTGAACAGATAATGTATTAATGCAGTGATTAATTCAGTCTTACGCCTCGCTTTCTGAGCACTGAAATACCAATCCAAAAAGAGAGCTGGCGTGGGGAGGAAATGGCTCTGGCAGTGACATCCTTTGAGTTCACAGTGCTGACATGGGACCAGAAGTTGGTAAAGCAATAGGAAATGCTTTCCAAGCATTACTGTAGATTTGTAATTGCATCTTCGTGGTGATCTCTGAGCAAGAGTAAGAGATTATTTGAATGATAATTCTTTAAAATTCAAAAGGTGCAGATGATGGAACATGTAAGTGGTGATGTATGCCTAGCCAAAACACATTTAAATCACTCAGATTTTCTCTTCCCTAGGGGAATATTTCAATGCACACAGCAATTGCACAGACTTGTAATGTGGAATGCAGGTGCATTTTGTAGTTCAGCTACCTGTAAAGCAATTTCTAGAAGAAAGAGTCATTCAGTTTTTGTTGCCTTTTATCTTAAAAAGAAATTGATTTCAACAAGCTTAAGATTTCTTTTAGACTGTTATTGCTCAGGATGATTGGATTTGCAGGAAAAAAAAAAACAAAAACAAAAACAACAAAAAAAAACACATACACACATTTTGTTTCTTTAAATGCAAAGGAAAAACTTCTAAATCTGTTTACTAAATCTGTAGAAACTTCCAGTTGCTCAGCTTTCACACACCACTCACTGTTTACAGTAGGTCTTAGAGATTTCACCAAGAATGAAATTCATTGGAGATATAGTAAAAGCATGGAAAAAAGTAACAACACAAGAAACTAGCCCAGGAGGTATTTAATTCAAGCATGTCTGACTACACCAGGTAAGACACATCAAGACTGTACTAAATTGGAAACTGTCAGAACAGGTAAAGCCTTGCTTCAGATAGTTTATCTTCCTCAGAAGCAGCGCATATCACCAGCACCAAGTCAGCTCCTGCACAGGGGGAAAGGAGGCTTACAGAGGCTGACTGCAGCTAAAAGCCACCGCCTGTCACAGCTCCAGTGTAAAAAGTGATGAGCTAACATGCCTCACCCACAAACTCAGCTAACCTGTTCAAGCACACAACCAAAGAAGCACCTGGCAGCAGGCCCGCATCCATTCTACTGGATATGGCTTTATCATTGGAAGGGGACAGCAAATATAGCTTCTTACCTTTCAGCACAAACATATACAGTAGCAATGTGAAAAGGAGTAAAGACCTCTCTTTGGACCATTTCAGATATACAGACTTGTAGGAAGTCTTCTTCACTTAGTTATTTCTTGTACTACAAATTAAGCTTTAAAGAAACCAGACTCAGGGGGGAGGGGGCATTATTCTCACTGCTCAGATTCTTACTTTATGGTTTTGATTCAAG
Seq C2 exon
TAGATGCTGTCTATGACTGCTCATCACTTTATCAGAGGAACTATCGCATCTCTGGTGTTTACAAGCTACCTCCTGATGAATTTCTGGGGAGTCCAGATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003179:ENSGALT00000035033:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGATGGGATGCTGCGA
R:
TCCCCAGAAATTCATCAGGAGGT
Band lengths:
347-1956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]