HsaINT0008025 @ hg19
Intron Retention
Gene
ENSG00000171819 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:24078]
Coordinates
chr1:11249398-11252427:+
Coord C1 exon
chr1:11249398-11250012
Coord A exon
chr1:11250013-11252326
Coord C2 exon
chr1:11252327-11252427
Length
2314 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGGTTTGTTCTCTTGTAGATG
3' ss Score
10.51
Exon sequences
Seq C1 exon
CTTGTGGAGCATTCGGGCTTGGAAGGAAAGCTATAGGCTACCCATTCAGCTCCCCTGTCAGAGACTCAAGCTTTGAGAAAGGCTAGCAAAGAGCAAGGAAAGAGAGAAAACAACAAAGTGGCGAGGCCCTCAGAGTGAAAGCGTAAGGTTCAGTCAGCCTGCTGCAGCTTTGCAGACCTCAGCTGGGCATCTCCAGACTCCCCTGAAGGAAGAGCCTTCCTCACCCAAACCCACAAAAGATGCTGAAAAAGCCTCTCTCAGCTGTGACCTGGCTCTGCATTTTCATCGTGGCCTTTGTCAGCCACCCAGCGTGGCTGCAGAAGCTCTCTAAGCACAAGACACCAGCACAGCCACAGCTCAAAGCGGCCAACTGCTGTGAGGAGGTGAAGGAGCTCAAGGCCCAAGTTGCCAACCTTAGCAGCCTGCTGAGTGAACTGAACAAGAAGCAGGAGAGGGACTGGGTCAGCGTGGTCATGCAGGTGATGGAGCTGGAGAGCAACAGCAAGCGCATGGAGTCGCGGCTCACAGATGCTGAGAGCAAGTACTCCGAGATGAACAACCAAATTGACATCATGCAGCTGCAGGCAGCACAGACGGTCACTCAGACCTCCGCAG
Seq A exon
GTAAGGAGACCAGTCCCCTGAGGGAGCGTGGAGTGCCTCCCCATCTACAGCACTGCTTCTACATATCCTGGTCATCAGAACCACTACTGGGGCCTCTTTTGTGGGTACACTTTCCCTTTAGTAAAGGCTTATGCAGTATTTCCTTTGACTTCTAATGCTATGTAAGTTTACCTAACACCTTCACGGGTCTCTTTTATCCACACAGTGTTTCAGCCTACCATCTTGGAGTGCTGAGATACTACATGGTTTGCCCAAAGTCACCCAGCAAGTCTTAGAAGCAGGGTTCAAGTCTTCCTGATTGGTGTAGCTCTGCTACTTCCTCACCAAGAGCTGACAGGCTATATCTCAAGAAATTCCAAGGAAGCACCAAACTGTAACAGCTGTTCCTCTGGAAGCAAAGTTTTGCCAGAAACAGTTCTCTGGTGTTCCTAAGATTTACCAGGAATGAGCATTAATGGAATTTTGTGTCCTCTCTCTGTAAACGTAACTCTTCTCATTGGCTCAGAGTTAAGTGTAGAGACACATAACCATGTGAAGAGTCCCTTTGTGTTCAGGAAGGATGCGGCTCCTTAAGGTTCCTCAATTGTGATACGTCTATTTTTTTCCATGGTCTTAAATGAATTTCTCCGAATACAGGATTTTTTAAATGCAATGCTGAAATATAGACTTAATAGGCCAAAAATAAGATAAATTTAATCTTTCTTTTGCAAAATAACTTTTATTTCTGGTTAGCTCAGCTCAGGTGGGCCAACATGAATTTACGGTTTAGAGATAAAAATTTGGTTTTCTGAAATTATCAGGAAAATATTAGTTGTAAGGAGCATATCCTATAGACATGTCATTTCTTGCTGATATAAAAACCATTGGTCCCATTATAAACTACATGAAGAACAAAGACATGATCAGCTTCTACTGACTAAGTCAATGGTTAACCTCAGCTCAAATTAAGAAAAAGTTTTAACATGAAACCAAGCTTGAAAATTCTGTTACCTGAACCAACATGTATCAATCACTTTCTAAGCATGGACTTCCGGGCCCTCAGTTTGGGATTAGAAAGGTATTCTCAGGCCATTTTCCAGACAAGTGAGTCCTGATTTGGTCTGTGAGATGAAACCAGACATGCGGAAGACCAGGCCAGACAGAGGAATCTGACCGTGCCACTTCCTGCTCATCCAAACAGGAGGCTTTCTCACCATCCTGCAAGGAGGTTCTTGGGGTCAAGTGCAGCTCTCCCACCAGGTCTCTTGCTCTTCTTGCCCAGGACATCATTCCTTATTTTTCTTCTCTATGACCAAGTGCTCAGTTACCCTTATATTCTATAAGTAGGTAGTCCCTTAGAGGAAGCAGTAAGTTGGTGCTTTCACCACTAAGACGAAATGAAGAATAGTGATGGCGAAGGCACACGTACTCTACCTCCCTTTCCCAAGGTGCTCTGCAAGAGAACCTATGTGCCTCAGACAACTCCCATCTGCCATCTTGGTGCTCCTCTCTAAGGTCCCAGTGCAGTGGTCACCAAGAAAAGCACCCCGAGACATAGCAGGCAGGAAGCTTCTCTTGGATAGTAAGGGCCGCAGTCTCTGAATCCTATCAGAAAAGGCTGTCTCTTCCACTATGCTCTTTGATATTTAGAATACAGAGCTTAAATCCTGCATAAAGTAGCAGCTCCATGGCCCTAGAGTAAAAAAACTGGCCAGTCTGATGCTCTCATTTCATTGTTTTAACAAAACTTCTGGGAGGAAGGCCTCAAAGGTTCTTCTGAGTGTTTTGAGGTGCTAGCTGGATGGAAGGGGAAAATATGTGATAATAAAATCTATCTCCCTTAATTATGGTCTCAGGTGGCAGTAGCCACCATCTCTGAACAACAACAAAAACAACCAACCAGGAAACATCAACAAAACCAGACTCTATGAGATATTCACGACTGATTTGTTATAGTGGCGGCTGTCTAAGAAGTCTGAATCTATCTGACAGGAGTATCTGTTACGTGGCCCTCATACACTGTAACATTTCTAGAATTCATGGCCCAGCTATAGCAGAATAATTTATTTCAGAGTTAACCTGAAACCACCTGTTGGAACGTCCCACTAATGCTATCCAGGTGAAGGGCTTCCCTACCCCTCTGCTCCACCGCTAGTAAAGCCAAAATACACCCCCTCTGGATCTCCCCATATCCACCTCTCCCAAATGCAGACACTGATGGGTAATTAACACCACTGAGAATCCCAGGGTAGAAATAAAGGCTCAGTCTCTAAACACTCAACTCAGATGGAGCCACTGGGTCTAAATGCTCACCCTGTGGTTTGTTCTCTTGTAG
Seq C2 exon
ATGCCATCTACGACTGCTCTTCCCTCTACCAGAAGAACTACCGCATCTCTGGAGTGTATAAGCTTCCTCCTGATGACTTCCTGGGCAGCCCTGAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171819-ANGPTL7:NM_021146:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF071836=DUF1403=PU(92.4=86.5),PF041569=IncA=PU(92.4=96.0),PF079267=TPR_MLP1_2=WD(100=69.0),PF0218118=FH2=PU(88.7=81.0),PF043567=DUF489=PU(82.1=73.0)
A:
NA
C2:
PF071836=DUF1403=PD(6.8=23.5),PF041569=IncA=PD(6.9=26.5),PF0218118=FH2=PD(10.4=35.3),PF043567=DUF489=PD(17.0=55.9),PF0014713=Fibrinogen_C=PU(14.8=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)