RnoINT0017335 @ rn6
Intron Retention
Gene
ENSRNOG00000009589 | Angptl7
Description
angiopoietin like 7 [Source:RGD Symbol;Acc:7553363]
Coordinates
chr5:165314150-165316652:-
Coord C1 exon
chr5:165315893-165316652
Coord A exon
chr5:165314251-165315892
Coord C2 exon
chr5:165314150-165314250
Length
1642 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCACTCTGTTCCCCTCACAGATG
3' ss Score
11.81
Exon sequences
Seq C1 exon
TCACAGCTCCCGTCTGAGCACACAGACTGTACAGACAAGGAAACAAACACTCGCCCTGTCCATCCTCCTCCTCCTCTCCTCTGGCCTAGGTTTGTGCTGACTTCACCCAACAGGCACCTGACCCTCCCAGATGAGGTGGGAGGGGCTTTAGCACACAGGGCCCTAGGGGTGGAGGTACAGGCACCAACAATATTTAAGATGCTGCCTTGGTGGGGTATTCAGACTTGGGAAGGAAAAGTGTTTAAATACCCACCAAGCTCCGTTTCAGAAACTCCAGCTTTAAGAAAGGCACACAGAGGAAGGAGACCACGAGGAAGGAAGAAAACTGCCCTTGTGAGTCAAACACTAAGCTTCCTAGTTCTGCTGAATACAGACTCTAGGAGGAAGACCTGCCCCAGAGGCCTGCACACAATGCTGAGGACCACCTGGCTATGCATTCTCCTGGTAGCCTCTGTCAGTCGCCCCGTGTGGCTGCAGAAGCCTCATAAACGCAAGACACAGCTCAAAGCAGCCGGCTGCTGTGAGGAGATGAGGGAGCTCAAGGCCCAGGTCGCCAACCTCAGCAGTCTGCTGGGTGAGCTGAGCAGGAAGCAGGAGAGCGACTGGGTCAGTGTGGTCATGCAGGTGATGGAGCTGGAGAGCAGCAGCAAGCGCATGGAGTCTCGGCTCACCACTGCCGAGAGCAAGTACTCTGAGATGAACAACCAGATCGACATCATGCAGTTACAGGCTGCACAGACCGTCACACAGACCTCGGCAG
Seq A exon
GTAAGCGCTGTCCCCACACTCCTCCCTCACCATGCTCCTGCTAAGTCTCCTGGTTCCAGTCTGCTTCTGGATTGCCCACTCAGCACAACTCTGGGGGGCTTTTGGGGATGCACCATCTTTGTTTGGGTTAGTGATGTCCTGTAAGCTTAGCCAGGATATCACAGCCTGTAGCCATTTGAAGAAAACCTTTGTATTCAACAAAGGACAGACACTTGGTGCTGTACAGTTCTGATCCACTTTCTCCCATGATTGCTAGTACAGCTCTCCCAAATAACAGAGAGAACAATGAAGGTGCTGCTGAAGTGCTGACTTCAGTGGCTGAAAATAAGGAAGGCACACACAGTGAGTTCTCGGGAAAACAACAGTCAGTTGCTGGGTAACCTGGCCCAGATGAGCCAAGAGATGAATTGCTGCTCAGAGAAAGATCTAATTTTCTGAGGTTACTGGAAAACATTTGGAATGATTATATTTTATAGATGAAGCATTTCTTACTAATGCTTACTGCACAATAACCCAAGTCAAGAAGACATGATTAGCTCCTATTGAGTAAGACCTGGCTACCCTTGGTTCAGACAAAGAAGAAGTTTTGCCCAAGGTAGCTGGTTAAACAAATACAAATGATTTCAAAGCGTAGTTCTCCTGACCTCGGTTTGAGAACAGAAAGTTAGGGGTTCTCATTTACCAAAAAAGTGAGTCTTTATTTGCTCTGTGAGATGAAAATGGTCATGTAAACCAGGCCAGACGCAGGGCTGACTGCACCACTTCTTGCTCCTAGAAGTCGCAGGAGGAAGGGCAGGTATAGCACATTCCCCTTTCCCAGCATGCTCTGCTGAGGGGACAGGCACTTTGGAATCTCCCACTTTCACCTGTGCTTTCCCCTAAGCCTCCAGCCCAGGGGGCACCAAGGAAAAAGTCCCAAGACAAGTGCAGAAGTATCCTGTGGACAACAGCCACAGACTCTACTACAAACAGCTGCGTCTTTGAAGCCTCAGTACAAAGCAGCAGCTGCAAGGCAGCCACAGACGCTTTCAAATCAAGCCCAAGGGGAAGTGGGAAAACCTCATTACCTTGATTTATCAAAACTTTCAGGGAACAGTCTCAAAGGGCTGCTTGGAGTTTTGGTTTTCATTTGAACGTCTAGTGATGTGAGATTGGGGAGGGATAAGATTCAAATCTGTCTCCCTTAATTTGAGTACCTGTTGGCTGTTAGCTGAGAAACACCACCAAACCAAACTCCCCGAGATACTCAGGAGTTGGCCTCTAGCTGAGGTCTGACTCAAGAAGTCTGAAGCTTCTCCTAGGGTAGCTGCCAAGTGGCCTTTGCAGACCATCCTATTACTGTTTCCAGAATTTACAGCCTAGCACCACAACAGGATGTCCTATATAGACTTAGCCTGAAGCTTCCTGCTTAATGGTGCCTTGGCACAGGTAAAGAGTTTCCTTACTCTATGGCCTCATAACCAAGGAAGCCCAAACATCCCCCTCGGTCCTGATGCACTTCTTGAACTCGATACCTCGGGGGAACTACCCACAGGCACCATGGGCAGAAATAAAGTCTCGGTTTTGAACCCAGCTCAGATGCAGCAGACATGCCCCCCCAAACTCAAGGCCTGAATCTCTGTCCACTCTGTTCCCCTCACAG
Seq C2 exon
ATGCCATCTACGACTGTTCCTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCAGATGAGTTCCTGGGCAGCCCTGAGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009589:ENSRNOT00000012726:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTCTCCTGGTAGCCTCT
R:
GGTACAGGGAGGAACAGTCGT
Band lengths:
358-2000
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]