MmuINT0015040 @ mm10
Intron Retention
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:148497988-148500460:-
Coord C1 exon
chr4:148499941-148500460
Coord A exon
chr4:148498089-148499940
Coord C2 exon
chr4:148497988-148498088
Length
1852 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTACTCTGCGTCCCTCACAGATG
3' ss Score
10.86
Exon sequences
Seq C1 exon
AGACTAAGGAAGGAAAGAGTTCCATTTCAGAATCTCTAGCTTTAAGAAAGGCTAAGCAAGCACACAGAGGAAGGAGATCACGGGGAAGGAAGAAAACTGCCAGTGTGGGTCAGAGAAAGAAGCTTCCTACTTCTCCAGGGACAGACTCTAAGGGGAACAGGCCTGCACACCATGCTGAGGGAGACCTGGCTATGTGTTATCCTTGTAGCCTTTGTCAGCCACCCAGTGTGGCTGCAGAAGCCTCATAAACGCAAGACACAGCTCAAAGCAGCGGGCTGCTGTGAGGAGATGAGGGAGCTCAAAGCCCAGGTGGCCAACCTCAGCAGTCTGCTGGGAGAGCTGAGCAGGAAGCAGGAGAGCGACTGGGTCAGTGTGGTCATGCAGGTGATGGAGCTGGAGAGCAGCAGCAAGCACATGGAGTCTCGGCTCAGCACTGCCGAGAGCAAGTACTCTGAGATGAACAACCAGATTGACATCATGCAGCTGCAGGCTGCGCAGACCGTCACGCAGACCTCGGCAG
Seq A exon
GTAAGTGCTGCCTCCACACTCCTCACCGTGCGCCTGCTCAAGGTCTCCTGGCCCCAGCTCTGCTTCTGGATAGCCTGCTCAACAACTTCGGGGGCTTTTGGGAATGTACGATCTATGATTGCACAAGCTTTGGGCTAGTGATATCCTGCGAGTTTAGCCAGGACATTTGAAGAAAACCTTTGTATTCAACAAAGGACAGACTCCTCGTGTTCTTCAATTCTGATCTTCTTTCTCCCATGGTGGCTAATAAAATTCTTCCAAATAATAGAGAGAACAAGTAAATGTAATGCTGAAGTGCTGACCTTTTAGTGGCTGAAAATAAGGAAGGCACACGCAGTGAGTTATTTGAGAAAAAAACATTCAGTTGTTGGTTAACTTGGCACAGATGAGCTAATAAATGAATCGCTGCTCAGATGAAGATCTAATTTTCTGAGGTTACTGGAAAACATTTGGAGTAAGTATATTTTATAGATGAAGCATTTCTTACTAATGCTTACTGCACAATAAACCAAGTCAAGAAGACATGATTAGCTTCTTGTGAGTAAGACCTTGGCTATCATTGGTTCAGACAAAGAAAAAGTTTTGCTGAAAGTTAAGCCTGAAAAGTCTGTTAGCTAATTAAACAAAAACAAATGATTTCAGAGCTTGGGCCTCCTGACCCTCAGTTTGAAAACAGAAAGTTAGGGGTTCTCATTTACCAAAAGGAGGGAGAGAGAGAGAGTGTGTGTGTTCATTTGTTCTGTGAGATGGAACTGGTCATGTTGGCCAGGCCAGATGCACGCAGGGCTGACTGTACCACTTCTTGCTCCTAGAAGTCGGCTGGGAGGAAGGGCAGGTATCCTCATTCCTCCCCCCCCCCCCCCCCCCCAGCACGCTCTGCAGAGGAAATAGGCACTTTGGCATCTCCCACTTTCATCTATGCTCCCTAAGTCTCCAGCCAAGGGGCACCAAGGAAAAAGTCTCAAGACATGCAGAAGTGTCTTGGGGCAACAGCCACAGAGTCTGCTAAAAACAGCTGCTTCTTTGAAGCCCCAGGACAGAGCCTCAAGGCGGCCATGGAAGCTTTCAGATCAAGCCCAAGGGGAAGTGGGGAAACTTCACTTCCTGGATTTTTTAAAAAGAATTATTTATTATTATACATAAGTACACTGTTGCTGTCTTCAGATGCACCAGAAGAGGGAGTCAGATCTTATTATGGGTGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTACTCGCTGAGCCATCTCGCCAGCCCCACTTCCTTGATTTATCAAAGTTTTAGGAACAGTCTCAAGTGCTGCTGGTTTTCATTTGAGCATCTAGTGATGTGAGACTGGGGAGGGAGAAGATTTCCAATCTGTCTCCCTTAATCTGAGTACCTGTTGGCTGGTAGCTGAGAAACAACATAAAACCAAACTCCCTGAAATACTCTGGAGTTTGCCTCTAGCTCAAGCCTGAAGCTTCTCTCAGGGCAGCTGCCACGTGCCCTTCGCAGACCATACCATTATTGTTTCTGGAATTCACAGCCTGGCACTTCAGCAGGATGTCTTACTTAGACTTAGCCCGAAGCTTCCTGCTTAACGGTCCCTTGGCACAGGTTAAGAATCCCCTTACTCTACTGCCCCATAACCAAGGCGGCCTGAGCAGGCCTCTCAGCCCTGATGCCCACTTCTCGACATCGGTACCCCAGGGGAACTACCCACGGGCACGCTGAGGTACAAATCAAGTCTTGGTTTTTAATCCAGCTCAGATGCACCAGGCATGTCTGACCAACCTCAAGGCCCAAATCTCTGTTTACTCTGCGTCCCTCACAG
Seq C2 exon
ATGCCATCTATGACTGTTCTTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCTGACGAGTTCCTGGGGAGCCCTGAGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989:ENSMUST00000030840:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGCCTCATAAACGCA
R:
GGAGGAAGCTTGTACACTCCA
Band lengths:
358-2210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types