GgaINT0134442 @ galGal4
Intron Retention
Gene
ENSGALG00000004568 | CELA2A
Description
chymotrypsin-like elastase family member 2A precursor [Source:RefSeq peptide;Acc:NP_001027562]
Coordinates
chr21:5546471-5547423:+
Coord C1 exon
chr21:5546471-5546623
Coord A exon
chr21:5546624-5547266
Coord C2 exon
chr21:5547267-5547423
Length
643 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTCGTTTTACATTTGTGTAGGTT
3' ss Score
7.46
Exon sequences
Seq C1 exon
GGGGACTCTGGTGGTCCACTGAACTGTCAAAATGCAGATGGCGCATGGGAAGTGCATGGTATTGTCAGCTTTGGCTCTTCTCTTGGCTGCAACTATTATCAGAAGCCTTCTGTCTTCACCCGGGTCTCTGCTTTCGACAGCTGGATCAAGAAG
Seq A exon
GTAAAGCTCTAGGCCTTGCTATTAGAGAATAGTGACACTTGATAATTTCTAAGGTCATTATTGGAGAGCCAGGAAGAGAAACATTTATCTTAAAGCCATGTATTCTCAAGGAAAAGTGCCTGAACAGTTATTTGACAGTTATCTGTTGGACAGCTCTGCCATCTACTCAGGGAACTGTATCACTTTTGATTCAAATGGTACTTTGCATGTAAGCAGCTATCTCTGTAGGCAGGCCCTTACCAGCATGAAAACCATCCCCAAAGCAAAAATAAAGCATCCTCTTTGCGATCAGTTATTCAAATTAATTTCACTTTTACATAGGTCTTGATGTTTAGGAATGCATTTTTCCTTCAATCTAGAGATGGACTTACACTCACTAATGGTGTGATTGGTGCAACTTCAGAAGTGATTGATACCCATCAATAACACTGATTGTTACAGTCGCATCCTAGAAGGCAATGCGTGCTGCTCAAGTCTGGAGCATCGGTTGTTTTTTAAGATAATAGAAACCTTAATTTCAAGAGTGGCCGAGGAGCAAAAGCCTTGTTTCACTTTTGTAAATCCCACATCCCAAACACAACACACTGCCCACAAATAGCTGGCTCTCATGGTCTGATTTGTGCCTCGTTTTACATTTGTGTAG
Seq C2 exon
GTTATAGAAAACAACTAATCCAGAGAGACCTGCGTGACAGATGAGAACAGTGCCAAGAACAACAGTTTGAATGAAGTCATAATCATGACACCTTTGATCACTGATAGCTGGGAAATTATGCTTTTAACTGCAATAAACACTGTTTTTTGCAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.5=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCTGGTGGTCCACTGAA
R:
ACAGTGTTTATTGCAGTTAAAAGCA
Band lengths:
294-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]