MmuINT1006706 @ mm10
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141814962-141818017:-
Coord C1 exon
chr4:141817865-141818017
Coord A exon
chr4:141815056-141817864
Coord C2 exon
chr4:141814962-141815055
Length
2809 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
CTCTCCTGTGTGTCCTGCAGGTG
3' ss Score
13.25
Exon sequences
Seq C1 exon
GGGGACTCTGGCGGACCACTGAATTGCCGGGCATCTAATGGCCAGTGGCAGGTGCATGGCATCGTGAGCTTCGGCTCCTCTCTGGGCTGCAACTACCCCCGCAAGCCATCCGTCTTCACCAGGGTCTCCAACTACATTGACTGGATCAACTCG
Seq A exon
GTAAGAACCGCAATCCCTGAGCCCACAGCCCCACAATGAGGCTTGCCAGGGGTTCCCAGGATCAGCATGTGGATCGAATTTCTTCTTAGGGGTCTATAGGCCGGTCCCACACCCTGAGTGCCCCATGTCCTGACTGCCCCAGGACAAAGGACTATTCAGTTCTATGTCATTGGGCCACTCCCAGGCAAATGGGGCTAAGTTAATCTTCTGTGCCTGTGTTCCAGAGAGTCCTCTTGTGGAAGCTCAATTTCCCTTTTACTATAATAATCACACAATATTAAGAGAATAATATGGAATGTTAGGCAGTAAAGCAGCTGCCTTGCAAATACAAGGATGGGAGTTCAATCCCCAGGACCCACGTAAAAAGCCAAGCATGGTAGCCAGCGCCTGTGATCCTAGGTCTGGAGAGGCAGAGCCAAGAGGAACCCAGAGGCACGCTGGCCAGCCAGAGCAGCTGAGGGTACAGGCAGTGGTCAGGGTATGGTGGGGGGTGGCAGGGAGCAGGAACAACTGCAGGAAATTGGCAGTCAGGGGCCCAGGGTGAAGATTAAAGGAACCCAGGGTCCTGAGAGGGACACTAGGAATGGGGAGGACTTTGCCCACAAGGTGTATTTTAATCCACTCTCTTAGTTTGCTTTTCTGTAAAATGGTTTGCTTTTCTTGAACTGAGCCAGACTCCTCAGCAAGTACAGCCGGCTGTACGACAGAACAGGCAGGGTGGTGGCGCATGTGGCAACGCCCACAAAGAAAGGAAGCTGCCACTGGCTCATCGACCCCCAGTTCTGTGTGCAGGGAACCTTAAATTGAATTAGGTGGTCGGAAAGCCAAATACAAACTGGCAGCCAAGAACGTGTGCCCGAGGGATCGGGCTGACAGAGCCAGCCTGAGGGAGCTTCCATGATGACCACTCTCCCCTGCCCGCTTGTCTCAGGCCTTTTCTGCTGGGTCGGTTCAGCACAAGGAGACTCAGCCCCAGAGATCCCAAGAAATTTTGTCAGGGCTCAGAAATGGATCAGTGGGAAAAAGGGGCTTGGGGCCAAGCCTGATTGGTGGTCTGAGTTCAATCCCTGGGTGAGCTGTGGTACACACAAGCACACACCGCAAGTTGATGCTTTTTTTTTTTTTTTAAAGTAAGTTAGAGAAAAATGGATAATCAAGAGAAGGGTTAGGGTTTGGAAGTTTTTGTTGTTTTGTTTTCCGTTTTACTTTGTTTTGATTGTGAACTGAGGACGGGAGCCATGACTATATTTTGACAGAGGGAAATCGAAAACCAGCTTAGAGCATTTCGAAGGAGCCTCCATGACTGGGTGGAAGGATGCTTCTGGGCTCTGTCTCAGCCAGATCCTCAGATCCTCTCTTTGTTCCCAGCTGCTGGATTAGTTAGAACACAGCTGAGCCTGGCAGCACCTTTGGGACCCAAAGCGTGACCTGTTTTCCCAGCACCTGCTGTTTCCAGCCATGGCAGACACAGCAAGGCAGATGGCTGGGCGCAGGAGTCAGGAAGACCGAAAGGGGATAGCAAACCTTGTTGGTACCAGGGCAGAGCCCCCTACATTCTTGGGAGAGTGGCCAGTGCATAGAACATTGGGGGACAGGCAGGGGTTGAGCGCTGAGCTGTTAGCTGTCCCTGGAGAAGCTGAAGAGGAGACAATGGGAGCCTCACCTGGTCCCAGCCCAAGGTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGTGTGTGGGCAGAAACAGCTGCAACCCTGAGGGGGTGCCTCAGAACACACCTGCCTAGACAGCCTTAGGTGATGAGCCGAGGCCAGCAGGCCACCAATAAAAGGCACAAACAACCCCGGTAGTCAGCAAATGTCCCCGGAAAAATGCCAACATGGGAGCCTTCAACAATCACAGCTTTATTTTTGGTTCAGAAGGGAATACATTGCTTTATTTAAAATATTGCTTATAAAAGGAACACAAGAGTGTATCACGTAAGAAATGAAGATTCCCCTGGCTTTAACCTTTGCGCCCAATCCACAGAGGCAATCGCTGTCAATTGTATGCTCTGTGCTCACCTGGGCCTTGTGTGCATAGACGCCAAAACTGCAAAACAAAACAAAACAAAACAAAACAAAGGATCCTGTATTGGCAGAGATGGTGGTAAAGATGCATAATGGCCAGAACTTGGGAATAAGAGGCAGGAGGATTGTTTTAAGGGCAGCCTGGGCTACATGAGACAGTGTCTCAAACAAAACCAACCAACCAAATGAAGCCAAGTATGGTGGTAATAAGGCCAGCCTAGGCTACATAGTGAGTCCCAGCCTCAAAACAAACAACAAAGAAACGCCCACAACTGCATGTGTAGATGGTCTGCTCACCATAAGCCATCAACACATTTTCCTTGTTTAATGAACTCAGCTGGCACCTGCCATTCTGAACTGTGAGGGGCCTGTGCACTGGTCCACACTTTTAAGACCACTACTCAGAGGCAAGGGCAGGCGGATCTCTGAGTTCAAGGCCAGTCTTGTCTTCATGGTGAGTTCTGGGACAGCCAGGGCTACACAGAGAGACCCAGTCTCAGGGAAAACAACAACAACAACAACAACAAAGAAACAGACAACATGAAAAAAAAAAAACCAAAACATACCCATCGGTGCATTTGGCATGTAATGATTGGTGATTCCGGGCCTTCCTGGCCTGATACCCAAGCAGGATTCCGGGCTAAGACCCTTCTTGACCCCTCTTGGCCCTGAGAGTCACTGAACTCAATGCCCAGTGTTCCAGCTAACCTCCTCTCTCTCCTGTGTGTCCTGCAG
Seq C2 exon
GTGATGGCAAGGAACTAACTGAAGACATTACTGCCACTGTCCCCCTGGAAATGCCATAGAAAAGAAATAGTAATAAAGTAATTTAAGAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579:ENSMUST00000102481:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.5=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types