RnoINT0033820 @ rn6
Intron Retention
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160374031-160377737:-
Coord C1 exon
chr5:160377585-160377737
Coord A exon
chr5:160374120-160377584
Coord C2 exon
chr5:160374031-160374119
Length
3465 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
CTCTCCTGTGTGTCCTGCAGGTG
3' ss Score
13.25
Exon sequences
Seq C1 exon
GGGGACTCCGGCGGACCACTGAATTGCCAGGCATCTAATGGCCAGTGGCAGGTGCACGGTATTGTGAGCTTTGGCTCCACTCTGGGCTGCAACTACCCCCGTAAGCCATCTGTCTTCACCAGGGTCTCCAACTACATCGACTGGATCAACTCG
Seq A exon
GTAAGAACTGTCATCCCTGAGCCCACGGCCCGCCCACCGTGAGACCCGCTGGGGTTCCCAGGGGCAGCAAGTGGATCTCATCTCTTTATATGGTCCCACTGGTGTGGACCCTCCAGTGCTGTCAGTGATATTTATCTGCAAAGCCCACACCCAGGTTGAGACCCCTACAACCTTAGTTTTTAGCACTTAATTCCCCTGAAGAGTGCTCCCCCAACTCCCTCAAGGCCAACTGTCTCATCTGCCCCGGGACAAAGGACTATTCGGTTCTATGTTGGGCCACTCCCCGGCATAAGTTAATCTTCTGTGCCTGTGTGTCCCCAGAAAGTCCTCTTCTGGAAGCTCGATTTCCCTTTTACTATAATAATCCCAAATTATTAAAAGAATAACAGAGGGAATGTTATAAAGTGCGTGCCTCGCAAATACAAAGGCCGCAGATCAATCCCCAGGACCCATGTAAAAAGCCAAGCGTGGTAGCCAGTGTTATCCTAGTGCTGGAGAAGCAGAGACAGGAGGAACCCAGAGGCACGCTGGCTAGTCAGAGCAGTTAAGGACACAGGGGCAGTCAGGGAGGCAGCAGAGCAGGAGGAAGTTGGCAGTCAAGGGGCCCTGGGTGAGGATGAAGGAACATGGAGTCTGCAGAGGAATGCTGGGAAGGGGGAGGACTCTGCCCATAGGGTGTATTTAACTCCGCCCCCTTGGTTTGCTTTTCTGTAAAATGGGACTTGAACCGAGCCAGACTCCTCAGGGGGTACAGCCCGGTGTCCGACAGAATGACTAGGGTGTTGGCTCGTGTGGCAGCGCCCATGAAGAAGGGAAGCTGCCATTGGCTCATTATCTCCAGCTCGGTGTGCAGGGAACCTTAAATTGAATTAGACTGCTGGAAAACCAGATATGAAGCGGCAGTTGTGAGCGAGTGCCTGAGGGAGCCGGCTGTCAGAGCCAGCCTGAGGGAGCTTCCAAGTTTGCCGGCTCTCACCTGCCCGCTTCTCAGTCTTTTGTCTGTCTGCTGGGTCTGTTCCGCACACAGCTAGACTCGACCCCAGAGCTCCCAAGAAAGTTTGTCAGGGCTCAGAAATGGACCAGTGGGATAGAGGGGCTTGGGGTCAAGCCTTATAGATGGCCTGAGTTCAGTCCCGGGTGTCCCGTGGTACACACATGCGCACACAGCAAGTAAATGCTTTTTTTAAATCTTTTTTAAAATTGATTTTGCTCTTTTAAAAGTAAGTTAGAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCCCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAATTGACAGAGGGGACTCTAAAGCCAGCTTAGAGCATTTCAAAGGAGCCGCGGTGATTGGTTGGGAAGATGCTTCTGGCCTTTGTCTCAGCCAGCTCCTCAGATGTCTTTTGTGGTCCCAGCTGCTGCATTAGTTAGCTCACAGCTGAGACTGGCAGCACCTTCGGGACCCAAAGCATGACCTGTTGTCCCAGCACCTGCTGTTCCCAGCCACAGGCGGCACAGCAAGGCAGATGGCCGAGGGTAGGAGTCAGGAAGACGAAAAGGGGAAAGCAAAACTTGCTGGTTACCTGGGCGGAGCTCCTGCATTCCTGGGAGAGCAGCCACTGGGGGAGAATGCTGGGGGACTAGGAGGGGAGGACAGGACAGGCAGGGGTGGAGCGCTGAGCAGCCAGCTGTCCCTGGAGAAGCTGCAGAGGAGACAATAGGAGCCTCACAAGGTCCCAGCCCAAGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAACAGCTGCAACCCTGAGGGGGTGCCTCAGAGCACACCTGCCTAGACAGCCTTAGGTGATGAGCCAAGGCCAACAAGCAGCCAACAAAAGGCACAAATGACCCCGGCATTCATCCTTTTGGCAAATGACCACTGAAAAATTCCAGCAATATAAAAATATTGCTTATTAAAGGAACATAGGAGCGTATCACGCAAATAACGAAGATCCCCTGGCTTTCACCTTTGTCCCACTCTACAGAGGCAATCACTGTGAATTATATGCTATGTGTTCATCTGGGCCTTGTGTGCATAAGCCAAAAATACAAAACCAAACCAAAAAGTCCTGTATTGCCAGACGTGGGGTACAGATGTATAATGGCCAGTACTTGGGAGTCAGAGGCAGGAGGATTGTTTTAAGGCCAGCCTGAGCTACATGAGACCCTGTTCTCAAAACCAGCCAGGCATGGTGGTAATGAGGCCAGCCTAGGCTACATAGTGAGTCCCAGCCTCAAAACAAACAACAAAGAAACTCCCACAACTACTTGTGTAGATTGTCTTCTAACAAAAGCCACGACAGTCACATTTTATTTGTTTAATGAACTCAGTGGTCATTGTGAACTGTGAAGTGTCTTCAGCACAAACATCACTAGAGACGTTTATTCTGGGTCCTGATTTTTGTTTTGTTTTTGTTTTTCGAAACCGGGTTTCTCTGTGTAGCCCTGGCTGCCCTAGAACTCACCCTGTAGACTAGGCGAGCCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCCTGCCTCCTGCCCTGCCTGTGCTGGGATTAAATGTGCGAGCCTGTCACCTGGCTCTGGGTTCTGTTCTGAACGGCTGCCCACACTGCTGCAGTGAGCGACCTCAGACACAGATCCCTGTGCTCTGTGTGTTTGTGCTACAAAAACCTGAAGCTCAGCTGGTTATAGAACCTGCATGTCAGAAGCACGGGAGGAACCCAGCATAGGTGCAGGGGGGAGGGTCAGGAATTCAAGGTCATCCTTGGCTACATAGCAACTTTGAAGCCATCTTGAGTTATGAGAAAACCAGCTCACCAAAAAAAAAGAAGCCCAAGGGTTAAGAGTTATTGTGTAGCTCTGTAGTAGAACAGGTGCATAGAATGTAAGACCCCGGGCTCCATCTCAGCACGGAAGACACACCCAAAAAAAGTATTTGATCCTGCTAATTGGTCATGGGAGATAAGTGAGAGCCTCACCCCATACACTACATTAGTGCCTCAAATAGTAAGTTTAAGAAACAAATAGGCCTGTGTAGAGGTGCACACTTTTAATACCAGTACTCAGAGGCAAAGGCAGGCGGATCTCTGTGAGTTCAAGGCCAGTCTCGTCTATGTGGTGAGTTCCAAGACAGCCAAGGCTACCCAGGGAGACCCAGTCTCAGAAAAAAAAAAACAAAGAAACAAATTACATCAAAAAACCACACCCATCTGTACATTTGGCTTGTAATCGATTCCCGGCTTCCGGGCCTGACGCCCAAGCAGGACTCTGGGCCAAGACCCTTCTTGACAGGAGGGGAAAACTGCGACCGCACCTCTTGGCCCTGAGAAGTCACTGAACTCAGTGCTCAGCCCTCAGCTTAACGTCACTCTCCTGTGTGTCCTGCAG
Seq C2 exon
GTGATTGCAAAGAACTAAGCAAAGGCATCTCTGTGACTGTCACCTTGGGAACGCACGGAAGGGACACAGTAATAAAGTGACTTAGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628:ENSRNOT00000018349:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.5=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]