BtaINT0045208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53295217-53295957:-
Coord C1 exon
chr16:53295805-53295957
Coord A exon
chr16:53295292-53295804
Coord C2 exon
chr16:53295217-53295291
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACTGTTCTCTGCTTCTCCAGAAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGGGACTCGGGCGGCCCCCTGAACTGCCAAGCCGAGAACGGCAACTGGGATGTGCGAGGCATCGTCAGCTTCGGCTCCGGGCTGAGCTGCAACACCTTCAAGAAGCCAACGGTCTTCACCCGTGTGTCTGCATACATCGACTGGATCAACCAG
Seq A exon
GTGGGTGCCCCTCCCAGGCCTCCTTCCTCACTGCCCACCCCTCACTTGCCTTTCCTTCAGTTGTTCCTCTACTCATTCCTTCACTCATTCATTCATTCACCTGCTCAAGAAGTATTGATTGAGTGTTTGCTGCACGCAACCTTGAGTCAGGTGCAGTAAAGGAAATGGCCATTGACTCCTCAACCCTTTAATCCATTTGCTTCAGCAAACACTTCTGTCCCAACCCTAGGCTCCCCACCAGGGCTCCCAAAGGTGAACTATGGCCCCCACACAGGAGAGGCGGTGGCATGGATGACCATCTGTCTTTTGAGGAGGGACAGGGGGTCACTTTGGGAGCAGGCAGTGTCCTGAGCCCACTTGCATGGTGGTGGGAAGTGCTGAGGGGGCCAACCCTGGGGGCAGAGGCAAGCCTGGCTCATTAAGGCCTGGTACTACCTGCTGTGCCCCCTTGTTCCTTCCCTCCCGGCGAGACTCATGCCGCCCTGAGTCCCTCACTGTTCTCTGCTTCTCCAG
Seq C2 exon
AAACTGCAGCTGTGATTCATCCCCAGGAGCCCAGGCCACAAATCCCAACAACCACAATAAACCTCTCTCCCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497:ENSBTAT00000034040:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.6=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCTGAACTGCCAAG
R:
AGGGGGAGAGAGGTTTATTGTGG
Band lengths:
214-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development