GgaINT0134357 @ galGal3
Intron Retention
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4994905-4995210:-
Coord C1 exon
chr21:4995061-4995210
Coord A exon
chr21:4994977-4995060
Coord C2 exon
chr21:4994905-4994976
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATCCCTTTGTCTTTGGCAGAAA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GGGGATTCGGGTGGCCCCCTGAGCTGCCAACGCAATGGCCTCTGGGAGGTGCACGGCATCGTCAGCTTCGGCTCCTCCTGGGGCTGCAACACAGCCAAGAAACCAACAGTCTTCACGCGGGTGTCCGCCTACATCGATTGGATCAACGAG
Seq A exon
GTGAGCAGAGCTCTGGGGGTGGGTCCCCTCCGTCCTTCTCCACGTGGAGGTCTGACCGTGGTCTCATCCCTTTGTCTTTGGCAG
Seq C2 exon
AAAATCAGTGAGAACTGAGGATGCGCAGCGTGGGTCACACATCATGGTGTGCAATAAAGGGAAACAACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701:ENSGALT00000022280:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(3.2=75.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCTGCCAACGCAAT
R:
CACCATGATGTGTGACCCAC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]