RnoINT0043261 @ rn6
Intron Retention
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160394677-160395339:-
Coord C1 exon
chr5:160395187-160395339
Coord A exon
chr5:160394753-160395186
Coord C2 exon
chr5:160394677-160394752
Length
434 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ATAGGCTTCTACTTCTCCAGAAA
3' ss Score
5.68
Exon sequences
Seq C1 exon
GGAGATTCTGGCGGCCCACTGAACTGCCAAGCAGAAGACGGCTCATGGCAGGTGCACGGCATCGTGAGCTTCGGTTCCAGTAGCGGCTGCAACGTACACAAGAAACCGGTAGTCTTCACCCGAGTGTCTGCCTACAATGACTGGATCAACGAG
Seq A exon
GTAGGTGTTCCTTGGGCCCGTCCCTGGGCCCCTGGGCCCCTGAGCCCGGCTCCTCACGCAACCTCTCCTTTCCGGATGTATTCACTGCTCGGTCACTTAATCCCACATTCAAGTTCACTCTTCCATTCACTGAGAGACCCTGGCTGAAGCCTTCTCAGAGGAGGCCTTGAGTCGGGACTGAGAGGAGGGGCGGCTCACATAGGGGGACACGTGGGTGGTCACATAAAGGTTTAAGGACAGGGGGTGGGGGGGGGGACAGAGGCAGGAGGTCTAGGATGTGTTCTGAGTCCACAAGCACCATGCTCTGAAGAGCTGGGAGACCCCGGAGCCTATGTGCAGACACCGGCCCGGCCTCCTGGGAACCTATAACCCCTCAGAGAGCCTTGTGCTGGCCCAGAAGGTAGCATCGCTCACATAGGCTTCTACTTCTCCAG
Seq C2 exon
AAAATACAACTGTGAAGAGGCCGTTCCAGAAGTCTCGCTGCCCGTCTCCCAACAGCAATAAAGCTTCCTCCATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745:ENSRNOT00000018393:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.6=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCTGGCGGCCCACT
R:
GGAGGAAGCTTTATTGCTGTTGG
Band lengths:
222-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]