HsaINT0043014 @ hg38
Intron Retention
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C [Source:HGNC Symbol;Acc:HGNC:2523]
Coordinates
chr1:15445597-15446654:+
Coord C1 exon
chr1:15445597-15445749
Coord A exon
chr1:15445750-15446574
Coord C2 exon
chr1:15446575-15446654
Length
825 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACTGTTCTCTGCTCCTCCAGAAA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGGGACTCCGGTGGCCCACTGAACTGCCAGTTGGAGAACGGTTCCTGGGAGGTGTTTGGCATCGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGAAGCCGGTAGTCTACACCCGGGTGTCCGCCTACATCGACTGGATCAACGAG
Seq A exon
GTGGGTGCTGCCTCCACAGCTGTCCCTGCACCTGTCAGCCCCTCCCCCTCACTCACCCATCCCCTCACTCATTCACTCATTCATGCGTTTATTCATTCATTCATTTATTCACTCATTCATGCATTTATTCACTCATTCATGCATTCATTCATTTATTCACTTATTCAGTCACTCATTCATGTATTTATTCATTTATTCATTCACTCATGCATTCATTCATTCATTTATTCACTTATTCATTCACTCATTCATGTATTCATTCATTCATGCATTTATTTACTCATTCATCCATTTATTCACTCATTCATTTGCTCATTCAGTGATTCATTCATGCACTTCTTCACACATTCACTCTCTCATTCAAGTAATATTGGTTGAGTGCTTCCAGTAGCAGGCCTTGAGTTGGGTGCCAATAAGGAAACAGTCATTGACTCCTCCATCCATCCATTCACTGCCTTCATCAAGCACTTATGTCCCCATCCAGGCCCCACACCAGTCTCCCCCAAAAACTGACCCCCTGAGGGTATGGCCCAGCAGAGGAGAGGGATGGTGTGGATGGCCATTTCTCATCTTGAGAGTAGGGGAACAGAGGGTCACCCTGGGCTGGGGGCTTCCCCATTGGGGACAGAGTGTGTTCCAAGACCCATTTGCACAGTGGCCTGAAATGCTGAGGGCCTCAGACCCCTTGAACAGGGACAAGGCTGGCATGTGAAGGCCGGGGGCTGCTGGCCATGCCCCCATGGACCCACCCTCCGGGCAGAGCCCTGTGCCACCCTAGAAGGTGGCACAGCCCTGAGTCTCTCACACTGTTCTCTGCTCCTCCAG
Seq C2 exon
AAAATGCAGCTGTGATTTGTTGCTGGGAGCGGCGGCAGCGAGTCCCTGCAACAGCAATAAACTTCCTTCTCCTCGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438:ENST00000375949:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.6=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGGTGGCCCACTG
R:
TGGCCCGAGGAGAAGGAAG
Band lengths:
230-1055
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development