GgaINT0134357 @ galGal4
Intron Retention
Gene
ENSGALG00000013701 | CTRC
Description
chymotrypsin-C precursor [Source:RefSeq peptide;Acc:NP_001264846]
Coordinates
chr21:4925271-4925576:-
Coord C1 exon
chr21:4925427-4925576
Coord A exon
chr21:4925343-4925426
Coord C2 exon
chr21:4925271-4925342
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATCCCTTTGTCTTTGGCAGAAA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GGGGATTCGGGTGGCCCCCTGAGCTGCCAACGCAATGGCCTCTGGGAGGTGCACGGCATCGTCAGCTTCGGCTCCTCCTGGGGCTGCAACACAGCCAAGAAACCAACAGTCTTCACGCGGGTGTCCGCCTACATCGATTGGATCAACGAG
Seq A exon
GTGAGCAGAGCTCTGGGGGTGGGTCCCCTCCGTCCTTCTCCACGTGGAGGTCTGACCGTGGTCTCATCCCTTTGTCTTTGGCAG
Seq C2 exon
AAAATCAGTGAGAACTGAGGATGCGCAGCGTGGGTCACACATCATGGTGTGCAATAAAGGGAAACAACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701:ENSGALT00000022280:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.3=94.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCTGCCAACGCAAT
R:
CACCATGATGTGTGACCCAC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]