GgaINT0134977 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:995445-995803:+
Coord C1 exon
chr21:995445-995573
Coord A exon
chr21:995574-995680
Coord C2 exon
chr21:995681-995803
Length
107 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGCCCTTTGCTCTCTCCTAGCGT
3' ss Score
9.58
Exon sequences
Seq C1 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
Seq A exon
GTAAGGACAAGGCCGACAGTATCAGGACATGGGCTCTGCCACCAGCCGGTCCCATTTTGGGGTGGTTTGCCTTTGGGGTGACAGCTCTGCCCTTTGCTCTCTCCTAG
Seq C2 exon
CGTGCGCTGAGGGGCACGGGGACGGCTGCGGGCAGCGCTGCGCCTGCCTGAACGGGGGGGTCTGCGACCCACAGGGACAGTGCCAGTGCCCACCTGGGTGGAGTGGGAGCAGCTGTGAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
NA
C2:
PF126612=hEGF=WD(100=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGGTTCTATGGGACAGG
R:
CTCTCACAGCTGCTCCCACTC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]