RnoINT0081746 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171567133-171567584:+
Coord C1 exon
chr5:171567133-171567261
Coord A exon
chr5:171567262-171567455
Coord C2 exon
chr5:171567456-171567584
Length
194 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CGCTACCCCTGCTTTTGCAGAGT
3' ss Score
8.2
Exon sequences
Seq C1 exon
CCTGCCCTCCTGGCCTGTATGGCAAGAACTGTCAGCATTCCTGTCTTTGCCGCAACGGAGGGAGATGTGACCCCATCTTGGGCCAGTGCACGTGCCCAGAGGGTTGGACCGGCTTGGCCTGTGAGAACG
Seq A exon
GTGAGCTATCTAGCCTGGGTGGTAGACATCCTTCAGGACAGAAGGACATCCTGTCAAAGGGGCAGCATCCTAGGGGGGTGGCTGTAGTGTTTTCCCTTCCACCCAAGGTGCAGGATGGTGGAGCTGGTATCTCCTGGGCAAAGCCCTAGCCCAGAAAGTTAGACAGACCCTCACCGCTACCCCTGCTTTTGCAG
Seq C2 exon
AGTGCCTTCCTGGACACTATGCAGCCGGTTGTCAGCTCAACTGCAGTTGCCTTCACGGGGGCATATGTGACCGGCTTACCGGCCACTGCCTCTGCCCAGCTGGCTGGACTGGGGACAAGTGTCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079748=EGF_2=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGGCAAGAACTGTCAGCA
R:
AGCTCTGACACTTGTCCCCAG
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]