GgaINT0135563 @ galGal3
Intron Retention
Gene
ENSGALG00000000402 | LOXL2
Description
NA
Coordinates
chr22:1223729-1232393:+
Coord C1 exon
chr22:1223729-1223904
Coord A exon
chr22:1223905-1232181
Coord C2 exon
chr22:1232182-1232393
Length
8277 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCTTTCTTTTCCACTCACAGAAC
3' ss Score
10.66
Exon sequences
Seq C1 exon
GGAAAATTTGGATGGACAACGTCCACTGCAACGGCAAGGAGGCCACGCTGGCAGCATGCACCTCCAATGGATGGGGAGTGACAGACTGCAAACACACCGAGGACGTGGGAGTGGTCTGCAGTGAGAAGAGAATCCCTGGCTTCAAGTTTGACAACTCGTTGCTCAACCAAATAGAG
Seq A exon
GTAAATGGGCTTTCCAGTTCCAGGATGGTGGTCAAGTCGCCTTCGGAGATGTCTGCTACGTGTTGTAGGTTACCTGAGCTGCACCCTATGGTGCGAGCAAACACTTGACAGTGCTTTTTTTATTGCATTTCTAAGAAAAAAAAAAAAAAAAAGGAGAGCAGAATGTTTGCTGTGCCCATAAGCTTCTACATATGTGGCTTTGTTGGTCCATAGCACCGAACTGCTGGGTTTTCTTTCCCCTCATGCCTCCCTTTGGGTACTGGGAGCAAACTGGAGGTCTTTGGTGTAACAGTGGGCTGGGGTTTGTGGCAAATAGGGCTTACAAGCATGGGGTTGGGAGGGATGGATTTACAATATAAAAGGGTTTTTGGTCTGGTTAGCTAAGTAATGATGTGACTGTAGTAATTCTATGGAAATAGTTCTGGGAATGGGAGATTAGTGCTAGAAGTGATGAAATGAACACAAGCAGAGGAAAACATAGGCTGGTCGCTGGGGGAAAGGCTCTGGATTTTGTCTGAGGTTGGATCTCCAGGGGAAACGATGGGAGTAAAATGCCTGAATCACTGCTCAACCAGCATTGTTAGATTTCTGCAGCATGAAGCTCTGTGGGGGAATGCTGGGCTGAGCTCATCAAAGGAAAAAAAAAACGTTTGCTCTTTCTAATGTTCAGGTTGGAAAATATTTGTGGTGACTCAGCCAACTGCTCCCTTGTTTCAGTGTGCAAAACGTATCAGAAGGACTTCTCCACTAACCAGAGCTGAACCTTATTTTAAGCAGAGAGGGAACCCAGGGTGCATCCCATACCACACCGTGGTTTCCGTGGCTGAATCTTGGCTCTGTTTGCCATCCGAAACAAAGGATGCTGCACTCTTTATCACTATGCAGCAAAATTATTCTAGCATTGCTTTGTAGTCACTGATGGATGGAAGGCTCTGAAGTTCTGCTTGCCTTGACCTGGCTTCCCTCGACTACAGAGGGGAAGGAAGGCCTTCCAAAGGGATCCCAATGGCCCCAGGCAGTTGCTCAGGGAGCGAGGCAAGCTCATAGAACATCAGTGATGGCTTTGGCAGATGTGTGCTTTCCCAAAGCCACAGTGAATCCTCCAAAGAGAGGCCTGGAAGAAAGGATGCTTTAGTCTAGACGGAGGTCGCATCACACTGAGATGCTTTGGGTATTAATCATAAAAGCTGGGGAGGGCTCTGCTTTTCCATTAGCTAAGCACTGGAGGTTGATTAATGAGTAGAACACGTTGGGGTGGCTGAGAACTGGTTGTGCCGATGCTGTGTGGGTGTTGAGCTTCGTGTAGGATAAAGAGAATGAATCATGAGATTGGAGCAGCTCATGTGGCTGAAGCCATAAGGAGAAATAGGTTTGGGTGAGTTGTATTCTCCATGACCTGGGAGCTGGGCATGGGTGAAGGCATTCATCACTATGATAAGTGGTGAATTGCATTCCCAGCAGTGGGTGAGGAGCACCGGTGACCAAAGGCACTGGTGTGGGTAGAGACTTTTCTCATATCCCTCTAAAGTCACAGGGAGCTGAAGGGTTCTTTATTCTGCTGGTTTTAATGCTGCAGGATTAAGGCTAAAGGTGATGTGCTATGAATTTTTCAGATGCCTTTGTGGAAGCACATCTCAGTCACAGCTAGCTGTCAAATGCTTCAGGTTTTCCTCCCCCCTTTCAGCTTTCCTTCTCTTCTCCGTGTTTACTTTGTCTCATTAGCAGCTGCTGTGGCATAGTTGGGAGTCAGAGACGATGAGAAGGGTTACTCATAGGGTCACAAACAGCGAGGTCAAAAGGCTGATGTGAACGCAAGCTGAAAGTCTTTGCCCTCTCCAACATGCCTGGGAATTCTGCACGTCGTAGCTTGCATTCACTGGGGGTAACATCATCGTTCTGTGAGCTGCTGGGTTCCTCAGGCTGGAGCCCAGTGCTTGCCCAATGGATGTTTCCCCATTAGGATGGAAACAGAGTGAGGGAGCTGAGATTTTTTTTCTCTCATGGATAGATCTCTCCACTGCCTTCAGCTACTGCACTGGTGAAGGCAGTGCGACAATAGGTGATGCATCGATGCATTTGGTGGGAGCAGCACTACTGCTCTGCCTTCCTGGGAAATGCATGCTCTGGGCAGCACGGACAACCCATCACCAAGCAAGTGCCATTGCACTCGTCTTAAATTCATCATTTGGAAATTGACTCCAAGCCCTTCAGTGCTACTTTCTGTGGGGCTGCCAAGGTTTAATGGGGAAAGCCAGCAGCTATAAGGCAATGTCTGACTTCATTCTGACTCGGCTCCAGCTCGGAGGGGCTGTGCAAACTGATGTTTGCTCAAATCTGGCCCCACTTCCGACAGGCAGAAGGTTTGCACGCTCTTAAAAGCAAAACGAGAGCCCTTGAGCAGAGCTTATTTTTATTGGATGTTAGGCATGCCTCCATTCCCCAGTTTGGAAATGCTGTAGATAAGTGGTATAGGATGAAACTTTCCATCAGCAGAAGCAACTTGGCTTAAATATATATGTGCGTATGTATGCTCAGCCGGATCTTTTCCCATCGCAGCTCATGCTTGGAGGATTACATCACACCTCTTCCTGTTCCTGAGCCTTTCCATTTCTGCTCCCTCAGTTCTATGCAGTGGTGGGAGATCTGAGACACGGAGGCAGCAGATGGACAGGAAGAGGTTTGACAGGACCGAGCTCAGGGCAGCTCTGAAACGAACCCATCAGCCTCTTGCTGAAGGGCAAAGCCCCATTCTTTGTGCTTGATACTTCCAGCAGCTGCTGCAGCTTCTAGCCTTGTTCAGGGGGTCATTTCTTGGAGGGTGGTGGATGCACAGAGTGGGATCAGCCCAGTGCCCACTTGCAGCAGTGCTTGCTCGATGCAACCTGGGGCAATGACACAGAGCATTTCAGAGCTGCTTTTCCCCCTCCTCTCTAAAATGTGTAGACTGAACACGCAGACAGCTTCTCATTTATGGAGAGAGCAAGGCATGTGGCTTAGCCTTGTTTTACTGTGAGTGTAAACGCTGCTCACAGCCATAGGGGCAGGAGGAGACTGATGCTGGACCTGTGCTCCTCCATGCAGGCATCAGCTCATCCAACACCATGTGGGCAAATTATAGTTGGAATAACACGGGGAGTTGACTTAGCTTGTATTTCTTGGAGTAAAAGCTCCCAGGTTTGCATGCTTGTGCTCACATCTGTGAGTTATTGCATGACTTGGGAATACAACGGGAGGGCAGAGCACAGCACCTGCTTTGTTCACAACGGTGTCTCCAGGTCCAGCTCTACAGCTGCTCTGTAGACGGGGCAGGGGATGCTTATGGGGATGACACACCTGAAAGCCCCACAGAGTGCAGGAAGGGAGCGGGGAGATGGATGAGAGCAGTGCGTTGTCCAAAGACACACAAACCCACCTGTGACAGCACTGCTAAGACCACAGCAGCCAGCTCTGCCTTGAATATGTTTCTTTAATAAATGCATATTTTTTTTTTTAAGCCATCCCCCAAAACATCCTTAGCAAAATATTTGTTGTCCGTCCTCTTCCTCTCCGTGCACACACATCCAGGCTGCAAATAGGACGTGCTCTAAATATATCGAAAAGCTGCAGCCACGGTGTTCCCAAATAGATGCGGTACCTGGGAGCAGACAGTGGGCAGACGAGGGCTGGTGGAGCACACCAGGCTGTGCTGCTATTCCTGTCCTCCTTTTCCTTTCTGGGAGCAGAAAAATCTCACTTCAAAGCCTGGTGGCTCAAAGGGCCCGGCTGTGCCAGGTTGGAAATGGGTTGAGTTATATTGTCTGGGGTTCGTAACCAACCCAGCTGGGCTCTGGGGATGAGGTTGTACAGAATGCCTCTGTGTGCTGTTGCTAAGTGCAAGGCTAGGGACAGGGACATGGTCAGTGGGCATGCTGGGATGGGCTGGGGTTGGACTTGGTGATCTTAGGGGTCTTTTCCAACCTTTATGACCATGGTGGATATGGATTGGGTTGGTCTTATTAGAAAAGACCTCTGAGATCACCCTTTTTGACCATGGTGGGATGGGTTGGGGTTGGACTTGGTGATCCCGGAGGTCTTTTCCAACCTTTTATGACCATGGTGGGTATGGATTGGGTTGGACTCGGTGATTTCAGATGTCTTTTCCAACCTTTATGACCATGATGGGTATGGATTGGGTTGGACTTGATGACCCTAATGTTCTTTTCCAATCTTAACGATCCTACTGTTCTATGATATTGCTTATGGCCTGGCACAAATAGAACTCTTCTGTTACATCACCATGCAAATCAATGGATGCTCTCTCTATGCCACGAGGATCTGCTCCCACCACCTGAGACCAGCCCCGTATGAAACCCCACTGTTTGTTTACCTGTTTCTGTCAACAGGCTTTAAGCTCTTTCCCCCTCACGTAAATGTTTGCCCCTCTAAGCACACACCTGTGTGCAACATAAATGCTGATGTTTGCCCAGAGAGCACCTCAGCATCTCTTCTGGAGACAGCTCAAGTCAAATGTTAATTAAGCCATTGAGGTAAGCCCTCTGTGTTTCTTCACTACTGTAATTTTAATGTGTGTGTAGGGGTTTCTGGTGCTTGCCATCCAGCCCTTGCCTCTGCTGCCCTTTGTTAGCCTTCCTTAGCCTGCTTTGCATTGTGCACAGTTTAGCAAAGACCTCAGCTTTGTCATTTATGATCTGCACTGAATCTGCTCCTGGAGCCTAATCCTGCATTGCACACTCATCTCTCACCCTTTTGCTCTGTGCAAACCTCGGAACAAAAAGTACTCGTGGCCCAGTGCAATGCAATGCTCCCAGGGCTGCTGCCTGCCCTGTACAGCCTGTTCAGCCTTGCAGCATCTCCCTCGCTGTGTTTATTTAGCAGCTGGGACCTCAGTGGTGACTCAGAGGCACAGCTCCAGATGTTTAAGTCCAAACAGATTCCTCTCATTCCCATGTATGTGAAGAGAGAGCTTTGTGAAAGCAGGAAGGCAGTGAGTATGGACTATCCAGGGACAGAGGTAGCGCTCAGGCTCATTGCTTTGCTTAAATCATACACGTAACTGTGTATAACCATTGCTGGGCATCTCTGGGGCTGCTGCAGGGAGAAAGGTGTCACTGAGCCTGGGAAGGGGGGGGTGGTCCTTCCCATAGGAACAGATGGCAAAAGGTGGAAGGAAATGTAATGAAAGCAGTGTGGGTTTTTGCAATCAGGAGATGCGTTCGGTTCAGAGGGATGAAACCAAAGCAGCTGAGGCTCATGCAAAAGCATCCTGAGCCAGAAATCCCTTTGCGAAAGCTCAGGACCAACCCCTTTTCCTCTTGCTATCCCCTGTTTTCTGAAGCTGAAGTTCATGGGTTTCATAACAGAGAGGAGCAGGAGGAAGGGGGAAGGACCCAAAACAGTTTTGCCTTCTGGAGGCTTAATGCAAGCAGGAGATAAATGCTTTTGGGCTTCCTGCTGTGTTTCCTAGAGGTAGGATTGCTGTTAGCTGGATGGCTGTCTGGCTCCTGAAATACTGCTGCAGGCTCTGCCTTATGGTTGCAGCACAGCTGCTCGTCTGATAGCTGCTTGGAGATCATCAGAGGGTTTACAGGTCTGCCTCAATAGCTGGCAGATCAGAACCAGCAGAGCTTTCAGACAGAGGTTTCCTCGTTAACACGAGCTCTTGTTGCAAGCCCTTGTCTCCACGTGTACAGAAAGCGTGCACAGAGCTGTCTGAAAGCATCTGCTCCAGCTATTAAATGTTGTTTGTTCTGATTTGGATGTGGAGTCTGTTTTCACCATCAGTCCCTCTGCTGTATGCATTGGTGTTGGGAATAAAATACAACCTGCCTGTGCTTGCATTACTGAATACTCCCAGTGCAGAGAAAGGAAACCATTCGAGCCTGTAAAGAACCGTTGGGAGGAAGCTCTTAGTATGCTGCAGGAGGAAGGAGTGCTTACTTTGATCCATCGTTCTTTATTCTTCCAACATAAATCCAAGGTCAGCAGCACGCTGAACTCTCCTCCTGGATGTTTTGCTGTTCGTTCAGACCCAGAGCAAAGCCTTGAGCTCATGGAGTCACAGAATGCCCTAAGCTGGAAGGGACCCATTGGGACCATCAAGTCCAACTTGCTGTACCAGAAGTCCTGTGCTCAGATCTGTTTGTGAGCAGAAAGGGGCACTCAGTGCTGGAGGTTTTGCTGCTGCTTGGATGCAATTCCTGCTTTAGGGTCACTGCAGAAGCACTTTGATCCCTCTGCATCTCGTTGCTCAACCTGCTGAGCATCTTTCCTTCCTCCCTTCTTCTGAGCACTGCATATATCTTGGAGGCTTTTCAGCCCTGTCACCCTCTGCAGTAAGGGGAGCATTCATCTTGGTGAAGACTTCTGCTGCAGCAGTGGGAGCAGTAATGGCTTAACGATGACTAATGAGAGCAACACAGGGTAACGATTCCGCTGCGGAAGCACCAGGCAGATGTTTCACATCTGGAAAGTTGTTCTGCATGAAGCGCATGGAGCAGTGCCACCGTGCAGCTTCTTTGCAAGACACGTGTGCATCTCAGAGCATCATTCCTGATATGGAGGTGATACCACACTTTGTTCTGAGTGTTTCGGTTCGTTTAGTACGTGCTTTGCAGATGTGCCAGTGGGTTCCTGCATGGGACCCTTTGTTTGAACACCTGAATGCCTCAGATGTGGCAAAATTTGGATGTTGTTGCGCCGTTTACTTTCCTCTCAAGGGCTGTAGGAGCTTTCCAGACCTAAGCCTGAGCTGTCAACCCACTGTGTTCATCCTTTTGGGGACAGATGGTTGTGCAGAGTCACCACGGGTTGTCCCATGGATGCTCCAGTTGTGCAGGGCTGAATTCCTGCGGCTGGAGGTGAAAAGGAGATATCAGTCCAGTGGTAAACGCAGGCAATAATATATGTATATTAAGGTTTGCCCAAGGCTGGGAGCAAGGCCCAGCCTCTCCCTGCAATTGGTTTCAATTTGCCCAAGGCTGTGATTCCCATCAGTGCAGGGGGATGGATGTGCCACGTGGGATTCTCAGAGCTGCATCAGCCCTGCAGTGCTCCCCCCACCCCAAATACCTGCATGCCACCCGCAGAGGCTGTGTCTCTTTAAAGCCTTGGGCCCTCTCCTTTTCCAAGTGATGGAGGGGAGGGCAGGATTCCTCAGGTCTGATGTAACCCTGTGCAAAACCACGTGGCTTCGTATATTTTCGGCAAGAAAAGCTCTCCTGGAAGCAAGCTATAAAGTTTTCAGTAGCTCCTTTGTAATTGCTTGCCACAGCAAATATTTTCCAGTCGGTCTTCGCTTTGGGCTCAGGTCCCTGAGAGGTTTCTGCAGCATCCTCACGTAGGCTCCAAATGCAAAATCCATTCGACCTCCCTGACTCATCTGCTGCAGGAGGAGCTCGGCTTGCAGAAATGGGGGTCTCCGCACCAACAGCGTGGGGATGGGTGCCCAGAGGGACCCCCCAACTCGGTCTCCTGCCAGTGCTCCGTGCCAGTAATCAGCCCCACCAAAGTGAGCTCGGCTCGCTCCAGTAGTGGCCAAAACCTATACATGTAGTGAGGTCACTGCTTCTGAAATCAGCACTTTCAATGGATTTAACGGAGATTTATTACATAGCCATTCATTCACATATGTATGTGTGTGTGCATATATCCTCTTGAAGGATGGAGGAAGGAATCGCACGAGACAGAAAGGTTTGTTTGCTTCACTGTTTTCATTGAATGGGTTGAATTGGAAGGGACCCTTAAAGGCCATCTGGTCCACCCCCCCCTGCAATGAACAGGGACACCCACAGCTCAATGAGGTGCTCAGAGCCCTATCAGCCTGAGTTTGGGTGTCTGCAGGGATGGGGTGTCCACCACCTCTCTGAACACCCTGTGTCAGTGCTTCATGGAATAAAATTATAGAGTCATTCAGGTTGGAAAAGACCTCCAAGATCCTGAAGTCCAACCCCAACCCACCATGCCCATAGAACCATCAAGGCTGGGAAAGACCTGTAAGATCACCTAGTCCAACCCCAACCCACCATGCCCATAGAACCATCAGGGCTGGAAAAGACTACTAAGATCCCCAAGTCCAACCCCAGCCCATCCCCACCATGCCCCTCAGTGCCACATCTTCACATCCCTTGGGCACCTCCATGAACAAAGATGCCGCCAGGCATCTTTTCCCAAACAGCCCTTCCCTCTGTGCAGCCCTCATCACTCCAAGCACAGCAGGTCCCCTTTCCCCAGCGGCTTCCTTGCAAGCCAGCATCACTCCTCTTTCTTTTCCACTCACAG
Seq C2 exon
AACATGAACATTCAGGTGGAGGACATCAGGATCCGGCCCATCCTCGCCACCTATCGCAAGCGGGTGCCCGTCACGGAGGGTTACGTGGAGGTGAAAGATGAAGGGACCTGGAAGCAGATCTGCGACAAGCACTGGACCATGAAGAATTCCCGAGTCGTCTGTGGCATGTTTGGGTTTCCGAGCGAGAGGAAATACAACACCAAGGTCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402:ENSGALT00000000548:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(40.8=67.8)
A:
NA
C2:
PF0053013=SRCR=PU(47.6=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]