GgaINT0135564 @ galGal4
Intron Retention
Gene
ENSGALG00000000402 | LOXL2
Description
lysyl oxidase-like 2 [Source:HGNC Symbol;Acc:HGNC:6666]
Coordinates
chr22:1222917-1227882:+
Coord C1 exon
chr22:1222917-1223128
Coord A exon
chr22:1223129-1227659
Coord C2 exon
chr22:1227660-1227882
Length
4531 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TCCCCTTTGGTTTCTTTCAGGAT
3' ss Score
12.55
Exon sequences
Seq C1 exon
AACATGAACATTCAGGTGGAGGACATCAGGATCCGGCCCATCCTCGCCACCTATCGCAAGCGGGTGCCCGTCACGGAGGGTTACGTGGAGGTGAAAGATGAAGGGACCTGGAAGCAGATCTGCGACAAGCACTGGACCATGAAGAATTCCCGAGTCGTCTGTGGCATGTTTGGGTTTCCGAGCGAGAGGAAATACAACACCAAGGTCTACAA
Seq A exon
GTAAGGGCAGAGCTCTGCGTGCATTTGTTTGACCACTTGGGGCCTCGTTCAGAAAGCCCATGTTGTCCAATGGCACTAGAGACCTCGAGGCAGAAAAAGCTCCGGCTGCTTCGTTCCTTCAGATCAGGTTTTCCTTCTGTGAAAATATTTGAGGCGTCAGGCATTTCCTTGGGTGGGCAGGGGGATGGTCTGCTCCTCAGCCAAGAGATGGTATCGCTGTTAGTAGCTGGTAGCTCCTGCAGTAGGAGATTTGGTCATTCAGCCCCGTGCATCTCTCTGTTTGCACCTATGGGGCAGTCAGTTCTCCCATTAGCAATGGGTTCAGGTCCTCTGTTGTGTGCAGGGGTTGGGCGGACGCGAGCAAGCCCAGTAGACCCATTAGCTGTGAGCTCCCATCTCTCTGCAGAAGGCTGTAGGATCCGGTCTGGTGCTGAGGGCTCCATTGGGAGAACCTTGGAACAAAGATGGCTTTTGTTGGCTGTATTGCCTATGTTGCCCATGTTCCTCAGTCCTGGTCTTGCCCACCCGTGACATGCTTGCCCCCATTAAGCAGCTGCTCTCCAATTTAGGGCAGTTGTGATTTCAGTGCCGTTTCATATCTGTGTATTTATCTCATATTTCTCGATTGCTTTAAAATGAGGGGAGGAAATGGTGATCCCCAGGGAGAGCATTGTGTGTCCTTGAGAGCCGCAGGCTGAGCAGTTCAGGCTGTGTTTCTCCACCCTGAAAGCTGGGAGCTTTGCTCTTTTGCTGCTGTCAATGCTCTTTGTCACCATCCTTCATCACAGACATAGCTCTTCCTATGCTGTTCCCTAGGAATAACGCCCCAGAGCAGATGCAAAATAGTTTAAGCTCAATTCTGCCTCATTTTTCCACTCTGCTTTGTGACCTAGGAGTGGGAAAGTGTCAGCCAGTGAGGGGGAAGAATGCTCTCCAGGCAGGAGCTGTGGTTTTCCTGTTCTTTTTGGCCTCTGCATTGCTATTTCTGAAAGCTCCCCCTGGAACCAGCTGGCCATGTCTCATTGACTTCATTAGAAAGACCGTAATCGGTGGAAGAGGTCTTTGGGTTGGGAGAGCGTAAAGCCATGTAGCAGCAGGAAGAATATAAAGTGAATAACTCAGGTGGAGCTCTGCTCTTGGGCATCCCAGGAAGGCAAGCAGTGAGCTGATAATTGCCAGCAGGCAGTTGTTATCCAGAGGAACGCTTGCTCCCATCAGTGCAGCAAACTCAGACCTGAGATTCCCATTCCCTGCACCAGGACAGGAGGACGGAACACTTCTAGTAAAACAAAGCAGATTTTTTCCTGCTTCTCAGTTACGGCATTTCCAAGAAAAGCATTAACTTTAGCAGCAGGAGCCATCTGCCTTAAGTAAAAGGATGCGTGGTAATTGTCCTGTCCCTTGCAATAGCACATGCAGAGATGGAAAAGCTGAGGCACGGTTCTTCAGCAGCACTGAAAATCCCATTCACTGGAGCTGGAGTTATGAATATGCAATGCTAACCACCAGCCTTGTGCACCTCTGCTACTGAAACAACGTGTTCTGCTTCGTTGTAATGAAGACCAACACCACCCGCATTGGTGAGCTGAGCTCGCCGGTCCTCAGCTCCGCCGCTGTGCAATGGTGGGAGGTGAAATGATGTGCAGATGGATCTTGCTTGAAAGAAAACAAGTTAGTTCATTGCTGTCACCGTGCCAGGGTTTTATTCCTGAATGTAACTCAGGCTCTGCAGTTGACAGCGCGATTTATGTTGGGAAATGAAACAAATCTTCAATGTCGTTTCCATGTTCCTGTTTGCGCTTCAAAGCGGTTTTATATAAGAGCTGTTTGTGAACTCCTCCTCCAAGCCCTGCTCTGAGCAGCATTAAATGCATCCTGCTGACAGGGACAGCGCGAGCTTGTGAGCTGATATGTCTAAGGCAGAGGAATGGGCCCAATGCCTTCCTGATGTTCTCCTACAGCTTTTGTCCAAGAGCAGTCAAGGAGTGGATGATGTGGCCAAAAGAATGGGCTGTTTGACCATGGATGGCCAAAGGGTGGATGGTTTGCCCATATGTGGACAAAAGGTGGATGGTTTGCCCATATGTGGACAAAAGGTGGATGGTTTGCCCATGATTGGCCAAAAGGTGGATGGTTTGCCCATGGATGGCCAAAGGGTGGATGGTTTGCCCATATGTGGCCAAAAGGTGGATGGTTTGCCCATGGATGGCCATAAAATGGATGGTTTGCCCATGGGTGGCCAAAGGGTGGGTGGTTTGACCATGGGTGGCCAAAGGGTGGATGGTTTGCCCATGGTTGGCCAAAGGGTGGTTGGTTTGCCCATATGTTACCAAAGGGTGGATGGTTTGACCATGGGTGGCCAAAGGTGGATGGTTTGCCCACGATTGGCCAAAAGATGGATGGTTTGCCCACGGGTGGCCAAAGGGTGGATGGTTTGCCCACGGGTGGCCAAAAGATGAATGGTTTGCCCATGGGTCACCAAAGGGTAGATGGTTTGCCCATGATTGGCCAAAAGGGTGGAGGGAAGAGCTCAGCAGTTCCAAGACACTTTGTTCAGTGTCTGCCTGAGTAGCATCTCCCAGTTTAATCAGTCTGCATTGTATGTCTGGTCACTTGCGTGGGGCTTGCAGTAGAAATCCCCATGGTTTGGATTCTCTCCAGCAAAGCCGGAGTCCTGAGGGCTTCAGGAAAAGGTCAGGGCCCTTTGGAGAGGAACTCTCCAGCTGCCATTCAGTGTGCCATGGGTGACTTTCCCAGCACATGTGTGATTTGCTCTCCGCTCTCCTTGTCCTCTCTGACACGTTCTTACAAAGCCATGCCCTGTGATGCTTCCCACAGCCCTCAGACTTAACCTATGGCTTTTTTTTTTCAAGCTTACGCAGTGAAGATCTATCTCTTCTGACGTCCTTTGGGTTCCAGCATGACCTCAAATTGGCCTAACTCAGCACGACTGCTCGCTCACCCCCTCTGATCTGAGCAGCGTTGTGCTTGGCTTGCACCAAGGCCAGCGAGAGGTGGGCTGCACCCTTTCTGTGCTAAATAGCAAGAATGCCCCGAGTTTCTGTTTGCAGAGATCATCTGCGTTCTGCTTTTTTCACATATCCATTCTGGGGAAGTGAGGTGGGGCTTCTCTGGTTCTTTCTCCCCAGCTTACCAGGGGCTGCTAACACCAACCAGATGTTTGTGCCTCGTAAAGTTTCCAGGATGAGGTCATTGTTTGCTATTCTAAGGCATCCCCGGAGTTACTTCTCTAAGACAGGCCGTTTTTCTTGTCTGCTTCGGAGTTCAGAGCTCACTGCATGTGTGTGTGGGGGGGTCCCTTGGTGAGAACACTCCTCTTGGTTCTCACTTCCACTGCACAGAATGGTGAAGCAGAGCCAGAGGAGCAAAGTCACTGCGTGAGGCTCTTGCAGATGTTCTCCAGTGAGTAAAATCTGCCTATAACCCTAATGTCTGCCCCAGGGCTCTGTGGTCTCCCCATCATGTGGTGCAATTGCCTCTCTGCCTCCAGCCTGCCTGTACTTGGCCCTAGCTCCAGCACAGAGAAATGGGGCTCCAAGCAGGATTAGCTGGTGACTCTGAGCCTGGACAGCTGCTGGGCTCATCAGCAGAGCCTTATGAGTGGAAGGGAAGAAGATCCACGGTGGCATAAGGTGGTTTGCATGGGACCACCGAAGAGCATCACCTGGGACAACCTGGCAGTCACCAGTTTGGTTTCAAGCAACCAAACTAGAAAATGCTCCGTGGTTTCTTTACCAGATCCTGGCCAAGCTCTCCATCCCACCCACTGATCAGCACTGCTGTTGTCTCTCCTTGCACTGTGCTCTGCCACTGGTCACAGCTAATCCTGGAGCAAGGAGCAGCACAGGGATCCAGCTGAGCCACGTCAGATCCCAGCGAGGCGTTGGCTCCCAGCACCTTAGCTCCTTCAGCTTCTCACATTTCCCTTTCAGCAGTGCCCTGACCCACATTTCCAATTTGCTGACTCTTTTAGCCCTGATGCAGTTGTCTGACTGCAGCTCGGATGAATCAGGGATGCTTTATTTTCCCATTTATCACACGTGCCCCTTCCCCTTAGCAGTCCCTGGAGCAGCTCCAGTTTGGGAGCAAGAAGCAGGAACTGCTGCCAAGCTCATCTGCTGCAAACATGTCAGTGAGGAGATTGCTCTCCCTCTCAGATATTGCTTTCAGGCTCACGGTGGTTAACAGTGCAGTTCTGAGAAGTGGGAGAGCCGTAGCACTCTGCAGCTGATAGGGGACGTCCAGCAAAGGGAGCAGCTCATTCTGGGAGGGGTTTCTGGGGGGGACGTGTTAGCACTCTGCCTTTTGAGTTAATAGACCTATGGATTCTTGAGTGACAACATAACAGAGGGTCATTGCGAGTGTGAATGGAGCAGCCCTCCATCCCTGCCCCATCCACCCATGCTCCATCCATTTAATTACAGGACGTTCTTTTCCCAAACGTAGCTCCATGGGTGCAGCTCCTCTGCATTCTGGCTCTTCTATTCCTCTCCCCTTTGGTTTCTTTCAG
Seq C2 exon
GATGTTTGCCAGCAGAAGGAAGCAGCATTACTGGGCTTACTCCATGGACTGCACTGGGAACGAGGCGCACATCTCCAGCTGCAAACTGGGCAACCACCTCAACGTGGACACGGAGAAGAATGCAACGTGTGACAACGGGATGCCCGCAGTGGCCAGCTGTGTCCCTGGCCGTGCCTTTGCCCCCAGCAGCCACAGTGGCTTCCGAAAAGCCTTCAGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402:ENSGALT00000000548:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(47.6=70.4)
A:
NA
C2:
PF0053013=SRCR=PD(51.4=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]