RnoINT0086056 @ rn6
Intron Retention
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51331933-51335548:+
Coord C1 exon
chr15:51331933-51332144
Coord A exon
chr15:51332145-51335325
Coord C2 exon
chr15:51335326-51335548
Length
3181 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CCCCTCCCATTTCCCTGCAGAAC
3' ss Score
12.43
Exon sequences
Seq C1 exon
AGCCTAAATATACAGGTGGAAGACATCCGGATTCGACCCATCCTGTCTGCCTTCCGCCATCGCAAGCCTGTGACAGAGGGCTACGTGGAGGTAAAGGAGGGCAAGGCCTGGAAGCAGATCTGTGACAAGCACTGGACAGCCAAGAATTCCCACGTGGTCTGTGGCATGTTTGGCTTCCCAGCAGAGAAGACTTACAACCCCAAAGCCTACAA
Seq A exon
GTAAGAGGGCAGGGTGAGCGGGGAGTACAGGGGTGTGGGGAGGTGTGGAAGGGTGGAGCTTCCTATTCTTGTGAGGTCAGTACAGTCCTAATGAGGGGCCATTTCACTGCCTGCTTAACCTTGCTTTAAAGTAACTCACACTCCTGTGGGAAGCAAGCTAGATGACAGAACTAATGCAACTCATAGGAAGGCTTACCCATAAGGCACCAAATGCTCCAGCCCAGGGAAATCCACCAGCAGTTCCAGCAGCTACTGGAGAATATATAGACTGTGTAAACGCAAAACATAGGTTGGGCAAGGAGAGTTTTAGCTAAAGTTCTCTCACGTGGACCCGATAGACTCCAATCCCTTCCTTGGGTGATTTTCCCCAGGTTTAGAAAGTGTAGTTGGAACAGACACAGAGCCCCTGGCAGACTTTCACAAAATCTAGCTTTCTTTTGGCCAGAGAAAGCCACTGGGACTCTCTGTGCAGTAAATCAAACTCATTAACTGCTACAGCCCTGCTGGCTTCTAGCTTGGCAAGAAGGATGTCTCTAACCTCAGTCATCCAGGCCTGGGGGGCAGCCTATGCTTCCCTTCCCCTCACCTCATCTCTTGACTCTCTTTGGCCAGCTCAGCCAATAATGCATAAGTGACTAAGATGGGGGTAGGGTGGTGCTTTGGCAGCTGGAGGCCTGTGGAGAGTCATGGTGGGCCTCGAATTCCAGAGAGCTGATGTAAGACAGAAGCAGGGCTGTCTGGGGAAGACTGAAACAGGTCTGAGGCAGCCCTATATGCTGGCAAGAGAGGGTGGTGCTCACCAAACATCTGGAAACAGGCAGACTTTCCTGAGCCGGCGATGGGTCCAGTGTGCTCTGACCTGCAACAGTAATGCCCCCCAAGTGTATGCTTCTGCACATGTATGGAAGGGAGGTATGGTTTCTCAGTGCTACGGCCTCACAGGAAGTGGGGAGGGGGAGCTGCTCTGGAATTAATAACAGGCCCCTTGTGGGCATCTCTACTGTATGATGTCATCATGGTGAACACACATCCTGAACTATCAGATATACTGTGTATTTTAGAGATTTGAGTGTTTGTACCCACTGCTGTGCTAGTGTTCTTCCAAGACACACATTTTGGTAAAAGGGAGGCAATAATGACATCTAAAGAATTTGTTCTTCCTCTGTGTTCACGCACATTCACCCCAAGACAAGGCAGAAGTTTCTGTGGAGACTGGACCAGCAGGGACAGACCTCACATCTGTCCCTTCCAAGAACTCCTTGTCACATAGCCTCCTCTGTCAGGGTACAACAGTCAGCTTCCTCAAGCATCTCTCTGAGTCCTGCCCAGGGGCAAGCACACAGACTGAAAGGCTCGACAACTTCAGAGGACGTGTCTTCTGCATACCCTCTTTAAATACCACGATTATTCATAACCTAATGTTCCACAGGCTGTCCTACTGCCTTAGCAAGGAGTCTTCCTCTCTCTTTGGTAATTGATTTATTTTTGTTTTGTGTGCATTGATGTTTTGCCTGCATGTATATCTGTGTGAGGGTGTTAGACCCTCCTGGAGCTGGAGTCACAGACAGTTCTGAGCTTCCATGTGGTGCTGGGGGTTGAGCTTGGGTCCTCTGGAAGAGCAGCAGTGCTCCTAACTACCTCTTACCCCTTTCTTTTTCTCCTTTAGCCATTTTATTAGTTTCTTTCTTTTAACATTCTCTCTCTCTCTCTCTTCCTCTCTCTATCTCTGTCTCTCTGTATCTTTGTCTCTGTCTCTGTCTCTCTCTCCCTCCCCCCCCTCTCTCTTTCTCTCTCTATCTCTGTCTCTCTGTATCTTTGTCTCTGTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATATTCATGCCTGCAGAGGACAGGGGCATTTGATTCTCTCTGGAGCTAGAGTGACAGGTGTGGTGCTAGAAACCAAATCCCAGTTCTGTACAGGAGCGGTGCATGTCCCTTAGCCTCTAAGCCATCTCTCTGTCCTCTAACATTTCTCTTCAGTGTGATAAAATATCAAAGTGATGCAACTCAAGGAAGGAAGGATCTTTTGGCTCACAGTTTAGGAGGACACAGTCCATTGTGTTGGTGGAATTCCCTGGCAGGGGTATGCAGCTGGGACTCCTAACATCCCTGAGGATCAAGAGCAGAAAGAGCAGAAGAGAGTCCAGGTTATGACTCTGAGCATCTGTCCTGCGAAGACCCACCTCCTCCAGCTAGGCCCTACCTCCCAAAACAAAGCCACCAGCAGGGGACCAAATGTCCCAACACATGAGCCTCTGGAGAACATTTCACACTTGATCCACATCACCACTAGGGTTTTATTCATTTCAGACACTGCTTGCCTGGATCTGTGCAGGGTTTTAAATGCTTTGCCAGCACTTTTTCAGTTAGCCACTACAGTGCTATGATAACTCCTCCATTTGAATACAATGAATACAGTAATGCTGAGAGATTAACAGATTGAGTTACTGTTTTGACCAAAACTAAGGAGAGAGAAGTCCTCACCCTGAGTTTTTAACTTTCTTACAACAGTGTTCCAATTCACAGAAAAGATGGAGCCGAAGTCAGGGAAGTATGCACCTGTAGATTTAGCTGTGGGCCCCAGTTACCAGAATTGAGAGATATCTCTCATCTGGGAGGTGGGTCTTTCTTCTGGTACCAGGGCTCTCGCCATGGGCTACCAGCTCTCCCAGCATAGTTCTTCCTCCAGCTATCCTGGTCTCTAACCTTCATCCACCATTACAGTAATGCTATGGGCTCACTGTCTCCTCTACCACAAATTGCACTGTAATTAACAGTATTATGAAGTGGAACCTTCAGGGGGTGGTTAGGTTGTAAGAGCTCTGTCCCTGAATGGACTAATGCTATTTTCATGGGACTGGTTTAGTTACTTTATTGTTTGGCTGTTTCTTTAAGAAAGGGAGCTTTTATAAACCACTCTCCTTTAACTGTTATGCCTTCAAAATAAAAATAAAGGCAGGAGTGTTGGTGCGTGCCTATAATCCAGCACAGGGGTGGGAGAGGGCAGGGTGACTGCATTCTGGGAAATGGATCTGCTAAACAGGAAGGAAAAAGGTGACTGCTGGGATGTCCTAATTACCCACCCCTCCCATTTCCCTGCAG
Seq C2 exon
AACCTTTGCCTCAAGGAGGAAGCTGCGCTACTGGAAGTTTTCTATGAACTGCACGGGAACTGAAGCACACATCTCCAGCTGTAAGCTGGGCCCTCCCATGTTCCGGGACCCTGTGAAGAATGCCACCTGTGAGAACGGGCAGCCAGCTGTGGTCAGTTGTGTGCCTAGCCAGATCTTCAGCCCTGATGGACCCTCAAGGTTCCGGAAAGCCTATAAGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758:ENSRNOT00000058663:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(48.1=71.8)
A:
NA
C2:
PF0053013=SRCR=PD(50.9=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]