GgaINT0135987 @ galGal4
Intron Retention
Gene
ENSGALG00000003709 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:HGNC:9051]
Coordinates
chr22:2716161-2717064:-
Coord C1 exon
chr22:2716973-2717064
Coord A exon
chr22:2716201-2716972
Coord C2 exon
chr22:2716161-2716200
Length
772 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCACCTTCTCTACTTGCAGGGC
3' ss Score
11.34
Exon sequences
Seq C1 exon
ATCCGGAGGTGATGTGGAAAACACTCAGAATGAAAGGCAAGCTCCTGAGTCTCCTCCTGCTGGTGGGAGTAATCAAGACTGCCCAATGCCAG
Seq A exon
GTAAGAGGGTAATACATCAAGTAATCATCTTGCCATCCTTAGACACTTAACCTAGTTTTCAGCAGCTCTTCCTTACCACAGACTCCAGCTGTATGTATCAGACAAAGGAAGGATCTAGTTCTACTCCTAGAAATCAGGGGAAGAAAAATAATTGGCTGTAGGATATGCATCTGTACCTTTCTGCTCCTTCCTCCCATCCCACTTTCAGTATTTAAATATGATGGGTAGCAAGTGAAAGTCTTGCACTGAAGGATCACACATCGCTGCATACATGTCCAGTCCATGCTGAGCTCTTACTATGACTAATCTTATTAACACGTGCTCTGAAAAATGAAAGTTAGTCAAAGTATTCACAGGGAAACTGCAAGCAAAAGCTGCTGAGCGAAAATAACTGCTTGTTCACATCTACATATTTGCAAATTATTTTCTTGGATCTCCTGCAAATAGCAGAAAGCTGACAAGTTTTAGTTAGCAGTTGGAGTGATCCACCAGCACATAAACACTTCAGAAATTATGCAAGTAGAACGCACCACCAAGTTCACAACACTCAAGTGACAAGCAGTAACCTGATAATAACCTGTAGTTAATTAGTAACCTGTACTAATTAAATTATTTGCAGTTTTTCAGTACGCATGCTGAAATACTTAACACGCTTTTCATTGTTCCCCGATTTTCAAGACCTCAAGAGGAGGTGTGGCTTCTTGAAGGCACTTGTTCTCTCAGTTTTCTTAAGAGAGTAGTTACTCACAGAATTCACCTTCTCTACTTGCAG
Seq C2 exon
GGCACACACATGCGTTACAAACGGGGAGCCAGATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709:ENSGALT00000005886:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]