HsaINT0126519 @ hg19
Intron Retention
Gene
ENSG00000104368 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:9051]
Coordinates
chr8:42048890-42050729:-
Coord C1 exon
chr8:42050632-42050729
Coord A exon
chr8:42048933-42050631
Coord C2 exon
chr8:42048890-42048932
Length
1699 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CACCTCTGGTTTCTTCGCAGGAA
3' ss Score
9.78
Exon sequences
Seq C1 exon
AATTTAAGGGACGCTGTGAAGCAATCATGGATGCAATGAAGAGAGGGCTCTGCTGTGTGCTGCTGCTGTGTGGAGCAGTCTTCGTTTCGCCCAGCCAG
Seq A exon
GTTGGTGTGCAGGATCCCTGTGTCCCGCCCCTCAAGGCTGTGATGCTTCCGGAGGCTCCAGGGGTCTGTGTCCATCTGGGCCACGGAGGTTGGAATGCTGTCAGGGAGCAGAGAGGCACAGGGACGAGGGGCTGGCATTGCTGTGGAGCACACAGCACACACTCCCTTCTGTACAGCAAACTCTGTATTTGGGGGCCCAGTGTGTAGCTGGGCCCTAGGCACTTATTTTGACCTGAGTAAGCGGAATTAACATGCCACTCCCTGCCTGTGACTGCCTTTTTTTGCAGCTGTTTTTAAAGAATGTATTCAAATTAATCCATAAAGTACAGTTGTCCCTCATATCTATGGGGTATTTGTTCCAGGACCCCCAAGGATACCAAAATCCAGGGATACTCAAGTTCCTCATATAGAATGGTGTAGAGTTTGCATATCCTATGCACACCCTCCTGTATACTTTAAATCATCTCTAAATTACTTATAATACCTAGTACAATGTTAATGCTATGTAAATGGTTGTTATAAGGTATTTTTTAATTTGTGTTATTTTTATTGTTGTATTATTTATTTATATATTTTTTGGAAACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGCACAATCATAGCTCACTGCAGCACCAAACTCCTAGGCTTAAGCCTTGGCCTCCCAAAACTCTGGGGTTACAGGTGTGAGCCACAAGCCCAGCTTATATTATTATTTTTTATTTTTCTGTTTTGGTTGAATCCACAGATATGGAACCTGCAGATATACAAAGTGGACTGTATTTATAAAAGACAATGCAGGACAGGGCACAGTGACTCACACCTGTAATCTCAGCACTTTGGGAGGCCGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTGGAGACCAGTCTGGGCAATATAGTGAGATGCTGTCTCTACAAAAAATTTAAAAATTAGCCGGGTGTACTAGTATGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCGGGAGGATCGCTTAAGTTCAGGAGGTTGGGACTTCAGTGAGATATGATTACGCCAATGCACTCCAGCCTGGGTGACAAACTGAGATCCTGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAGGCAATGCAAGTGCCATGAGCCACAGCAGAGGCAAACTGCCCTCATGGTGCCTACTCTCTAGCTGAGATGGAAGCGCTACACACACTCTCTGAAAATGCCTAGCAATAAAGGGCCTCACGGAAGTCCAAACTAACCACACCTCTCCCACAGGACCCTACAGCGGGGAGAGCCAGGTGACTGCGTGGAGTAGACAGCCAGCTGCAACTCCATTGCCCAATATGGTGGCCACTTACCTTGTGCAACTGTTTAAATTTAAAATAATTAAAGTTAAAAATTGTTTCTCAGTCCCACTGGCCACATTCAAAGCACTCGGTGGCCCTGTGTGGCTTCTGTCGTGGACAGCACAGACAGAAAACATTTCCACCAAGCAGAAAGCTCTTCTGGACAGAGCCAGTCAGGAAGGAGAGGAAGAATTGGACTAGAAGGCAGGAGATGGACTTTCACTTGGGCCAGTTACCCGAGGGGGTCTCTGAGCAGAGGTATCTGGCCGGCAGGTTCACATGGGCTTCTGGGTTGGCCGCCTTTACTCTTAGTACACCTGGCATGTGCTGATCCTTCCTCCACCTCTGGTTTCTTCGCAG
Seq C2 exon
GAAATCCATGCCCGATTCAGAAGAGGAGCCAGATCTTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104368-PLAT:NM_033011:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)