MmuINT0121209 @ mm10
Intron Retention
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:22767080-22768488:+
Coord C1 exon
chr8:22767080-22767167
Coord A exon
chr8:22767168-22768445
Coord C2 exon
chr8:22768446-22768488
Length
1278 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCATTCTGGTCTCTTTGCAGGGA
3' ss Score
11.08
Exon sequences
Seq C1 exon
GGACACAGAAGAAACGGGGAGCAAAATGAAGAGAGAGCTGCTGTGTGTACTGCTGCTTTGTGGACTGGCTTTCCCATTGCCTGACCAG
Seq A exon
GTGGGTCTACCTCCCTGCCTCACCACATTGGGTCTCCAAACTTACAGATAACGGTGGTGTAACCAGGAGTCTCCATGCGCCCAAGCACCTCAGGGTGTAGGACACGTTCCCAGGAGTGATCAGACACATAGCGCGCACTCCCCTGTGGGTAGGATACTAAGGATTTGAGTTCTAGAAGTAGAATCTGGCCACGCCTCTGGCTTAAAGCCATTCTTAACTTGTGCCCCTCCCTGCTTTGGAGCCATTATGTGAAAAAGTGTCTTTGCACGAGTACGGTAGTGCACGCACATGTGCATTCCCACCAACCAGGAGGCTGAGGCAGGAAGGTCACAAGTTTGAGACCTTGTTGACATAGACTTCAAAGACTCCATGGCTAGGGTTGAAACTCAGTGAAAAAAGAACCTGCACAGGGCCTAGGGTGTGATCCCCAGAATGGGTGGGGGGCGGGGTGGGGGGAGGAAATGCATTTGAATTCACCCATAGGGTACTAAGAAAAGACAGGCATTCTGAGCCACGGAAGCAGGTTAGCTGATGGGGACAGAGGCTGTACTCACTTGCCAAAACCTCACCTCAACACAGAGCACGATATACGATATACATATGGCCAAGCTTACCTGAGCTGTGGGAAGTGCATCTAGAACTCGGTTAGGGGTTAGCGGTTAGGGTTTAGGGTTGGGGTTGGGGTTAGGGTTAGGAATAGGGTTAGGAATAGGGTTAGGGATAGGGTTAGGGGTTAAGGTTGGGGTTGAGGTTAAGAACCAGTTTAGGGATAGTTAGGGGTTAGGGTTAAGGGATAGGGTTAGGGGTTAGGGTTGGGGATAGAGTTAGGGGTTAGGGATAGGGTTAGAGTTAGGGTACACAGTGCTCAGGCACAGGATTGATAGAGAAGGGAGGATCCCAATGTCTTCATGAAAGACACAAGGACCTGTGGCTTTATTTAAATCCACTAGCCATGTGCCGATAACTTAAAATTTAAAATGAACTAAATCAAATCGGAATTCCAGTTTATCAGTCGCCCTGGCTACATTTTAAGCAGTCTGTGGCCATGTGACATTAGTGTCTGCCACACTGGATGACATGAATAAGAAGCATTTCTGTTGTGCAAGAAGTTCTTCATGGCCCCGGGGATGGGTGTTAGGCACGTAGGAAGAGCAGGTAATTTGACAAAAAGGTAAGAAAGGGTATTCTATGTCTCCTTAGGTAGCAGCTGGTTGGAAGACTCTGGTTGGTCTTTCCCCAGCTCTTGCTGACCATTCCTCCATTCTGGTCTCTTTGCAG
Seq C2 exon
GGAATACATGGGAGGTTCAGAAGAGGAGCCCGGTCCTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538:ENSMUST00000033941:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types