GgaINT0136163 @ galGal4
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr22:1884116-1888175:+
Coord C1 exon
chr22:1884116-1884148
Coord A exon
chr22:1884149-1887989
Coord C2 exon
chr22:1887990-1888175
Length
3841 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACCCACTTTTTCTCCTTCAGATA
3' ss Score
11.45
Exon sequences
Seq C1 exon
ATAAAAAACCTCTTCATGAAATAAAATCCCAAA
Seq A exon
GTAAGTTATTTTCTTTCCTCTTGTAAATATGATTTTCCTCATCTTCTCTGCCATTCTGTTTTATTTGTTTAGAAACTGAATTCAGCTGAAGGTTATATGAAAGGCTTTCATATCTACTGAAAGCATCTTTTTAGCGGCTTGGTGATCATAGCTTTTAGACTGAAAATAAAAGGAGTGACTGTTCTTCAGTAATTTTGTGTCTTGCTGAGCCCTGCATATCTTCACATCAATCTCTTGAGGACTTGTGATTAGGGGAAAACTAAAAAGGTAATATAGGAGTTTGGCTTTCTTGGTTCTAATCTGTCTCCACTACTTGCTCTGCCTTGGTCAGCTCATTCGATTTATCACTGGTGAAGGGTGTTTATGTGCTTTATGACATATCATTTGTATACTGCTTTTCAGGAGCTCCTATCCTGCATTGTTCCTCAGTTTTCCATTGATTTCAGTGGAATTTTAGTTAAAATAAGAGTGGTGCCTTTGGTTTGGATTGATTAATTGAAAGACTTCATTGAAAGAGAAGGCGCCCTTCCATCGGAGCCACAACCTCCATGAGGCCTGTCCCCTTCTAAGCTAAGACATTGCTTTTCTCTTATAACCTTACACAACGTTTTGAGGATTACTCACTGCTTATTTTTCAACAAAATTTCTTTGAATTTTGACTAATGAATAAATAGATTAATAAATACTTTTTTTTTTTTTTTGCTTAATTCCTTTGAAGGACTTAGTACAAGAATCCATTTGTCCTGTGCATCCAATGTAGTGGGTGCAATTGTTTGTATCTTCTTTAAAGAGAGATTCTTCTGTGATGTATATGAATGGCGTGTTTGTCACAGGGATCCCATTATCTGAGGTTTCATGGGAGGTACATCCCATGTCTGTGGTCTTGGGGCCGCCTCCTGGGTCGCACCAACCCATCTATGTGGGACTGAATGCAACTGGCACATTTTTGTATATCTGTGCTGTTCCCATTTAATTAGAGAATCCTGAAAGAGCATTAGTTAAACTGCTTTAATTTCTGATTTATTAAAAAAAAAAAACCCTTGATGGCATTGATTTTAGCACGTAAGGTTCCTTGGAGAATTAAATGGTTTCTTTAGCTGTGGGGTTAGAAACATGTCGTACAGCCTGCTGCTATTCAGTGAAACAGGAACTTCATTTAAGACTACATGAATCATCGCTGATGCAAAATCAAAGTCAATTATGAAGATAATTGAGAAACAACCTGTTCTACTAACTAGCCTTTACATTATGCTCTGACTTTTGGTCCTTACTCTCCAGGAGTAGCTGTGTGAAGCAATGGATTTCAAGTTGCTAAGGGGCATCAAAAGTAAGAGAGGTGGAAAATAAGGGAGGATGGGAAACCAAAAGAATCTTTCCCATCTCCTAGCAAACTCTAATGGGAGACTGGGGGAAATACATGCCTTGCATATCTCCTGGAAAGCACTTATTGTAAATGAGATAATTTAATCAATTACATTTCCTAATGTACGAAACCAAATGTTTCATTTTCTGCTCCTGCACATCTTAAATTATCTTCAGGTGCTGTAGGAAACTTAATCATAGTTAATAGAAACTTCATTACCATCAAATGTGCTTTCAATAAATGTTGTGTAACAGTGTCAGAAGGTGGAGTGAAATATGGGCTGCAATTAACACAAACATGTGCCCTGTAACTGAAATGGGTAGAAGTTGGAGCCCTTTGCAACAGTCACCACCTCCTCGGGGCTGGGAGGATGCAGTTCTTAACCCATCATTGACCAACTGTTCCCATTTGTTTGTTTGTTGGAGACATACCACTCTTTCCCTTGACTTGTTTGTACTAATCTACAAAATCTACAGAAATGAAGTTGGTGATGGAGTATCACAGTTAATTCCCTGTAGCAACAAAATAGATTGGAAATAGAAAATGGGAAGGATAGAAACATAATTTCTGTACGTTCTGTACATGATGTTAGAGAATAAAATGGAGGTAAAACAGTATGCGATTGAAGCGTTGGATTAGGATTCAAGTACTCTTGGTTTGAGGTATTTCCAGGGTCTCCCTCTGTGCCCTGGTCTTTTTCTCAGTAATTCATGTGGTAGAAGCGTGTTGTAATTGTGAATTTGGAACTGAGCTGTTTACTTCCAATTACTTGTTGTGAGAGGCCGCAGGGATAGATGTCTCCTGGAAGCTGATATTTGCACAAACTTAAAGCTCGGTGATGTGTTTTTTGTTGTTGGTTTTCCTTTTCAGCAGATTGCAAATACGTTAAAAAATGGGAACCTTTTTCAATATGAGGTTGTTTGAAAATAGCACATCTCTGTGCCTCAGCCTCCTTGGAGCAGTGCTTTCCTACTCAGTTTCCTTGCTGCTGCAGTTCATAATGGCATTTTTACTTACATTAGAGTACAGTTGAACTTAATGGTTGCATTTGGCAGCTGCTGTGCCTTCCCAGGAAGTTCAGCTTTGTTGTCAGCCATGTAGTTTGTGTAGGAAACTGGTGAGCCACAAACACGGGCTTTTCAAATGCTGCCCATGGGTCGTAATGACCTTCACTGCAGTGGGTTGTGGTTTCATGTTCATTTTAAAAATTCAGCTAAAATAAAGTTATCTGACTGTCTAGAAAAAAAAGGGTGCACAACAGACGCCTCCTCCCAATTATTAAGTAGTTTCACTAATTATGTACATATTATATGTTGAATTTTACTTCCTACCATATATATTCACTGGTACTGAGTAGACTGTTTTTCCTGTTTATAACAAATGACAGCGACAAAAAATAAATGCACGTTTTGTACCAACATGGTCCTCACCTGATAGCAAGAAACAACATGGAGTGAGATAAAAGGTGATGCACAGGGTGAATGTACACCATTATCTCTTCCTCTAAGCTGGAGTTTGGCATTCAGGGAGCTGTTCATGGACCCACTACGTAGTTTAATTTCATGGTATGTGGTCCTAAATCCCAGTAGATCTAGAACAGCAGGACTGGATAATTCAATTACATAATATTCCAGGTTTTATTTGGATTCATTCTTTCAAAGAAAGAAATTCCTCTTCTCTGCTGTAGAAAGTTTGAAGTCTTAGGAAAGTTGCTTGTAAGCTTAACGTGTGGATGTGGTCAGAGGAAAGGCTTTGGGTTCCAGCTCATTTCCAACAGCAGGATTCCACTAAGATATGCAGGATATTGTCAGCCATGCTTCAAGCTTTGAGAGGGTAGATTGTTCCTTCTTAAGCTAAAGCCCACACAGAAAAATAAAGAGGGGAGGAAGGGAAAATCTTCACTAAGATTTTTTTTTCAGAGGATTTATGACATCCTGGATTAGTTCTAGAGCTGCAAACAAAAAACTTACATGTCCCTGGAAGCCATCAGTAAATGAGAATCCTGCAGTACATAAAACAACTCTCCCTGGCTTCAGTTCTTCCACGTTCTCCCCTCTGAGGGCTGTATTACCATACTTTAATGATCTCCACTGGGCAAGAATGGGAGAGGATGGCATACCTGAGTGCACAGCCCGAGCTAGCAGTGTGTGCTGAGGAGAGGAGGTATTTAGTGGTAAGCACTCTGCTTCTGACTGCTACGGGTCCAACTATCCCACTTCAAGAAAACCTCAAATACTATCATGCAATTCCTAAATCAATGTAAGCTTACTACACGGTATGAGGCACCCAGGAAATTTGTTCATGCTTTCAAATGCTTGCTCCTTGGTGTTCTGCCCTGCTGCGATCTGCCCCATGTTTACGCCTCAAGCTTTACTCCTCTGGCCATGTGTTTGTGGCTGCATACAATCCCCACTGCTGGGAACCCTTCGGGTGTTTTCATGAGTGTTGCTGACTCGGTACCCACTTTTTCTCCTTCAG
Seq C2 exon
ATATAGAGACAGCCAGTGACATTGCCCTGTACTCCGGCCTGGGAGCAGCAGTCATTGCTGTAGCTGTGCTGGTGGTTGGTGTTACCCTTTACAGACGGAGTCAGAGTGAGTACGGCGTGGATGTGATTGATTCATCTGCACTGACAGGAGGCTTCCAGACATTTAATTTTAAAACAGTCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]