MmuINT0170637 @ mm9
Intron Retention
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 homolog D (C. elegans) [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:29834693-29835634:-
Coord C1 exon
chr8:29835620-29835634
Coord A exon
chr8:29834879-29835619
Coord C2 exon
chr8:29834693-29834878
Length
741 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ACTTCTCTTGTGTCTTTCAGGCA
3' ss Score
11.45
Exon sequences
Seq C1 exon
GATGGAGTAGGAGAG
Seq A exon
GTATGGGAGAAACAGCATGTGCCCCTGAGAGAAGAGCCCCCTAACAATAAAGTATTAGAGTCTAGCATTGCATTGGTATCAGAAAACATTGACTGTGGACACAAGAGCCCTTGGCAACCAAGATATTCATGTTTCACATAAACATTGCTCTCATGATGATTGTGTATGCTAAACCAACATTATTACTATGCTCTGACTTTGAGTATTGGTATCAAATTTGACATGTTTGTAAACCCTGATCTTTTCTCTTTTAACTCACAGACCACGTTAATATCCTACCCTAGACAGCTCTGTGTATATGCATGTGCCCCAGGCCCCACATGAGCAGAGAACCCACCCTCTTTTTTGTCCTTTGTGTGAGTCTGTTTTCCCTTGAACAAAAAGTCAAATATAAAAATGCTTTTTAGGTAACTATGACTTGTTCAACTAAGTTACGGAGCTATTTTTTCTTACTAGAAAAAAAATGTTATGTTCTTTGCAAAATTGATCCTCTGCAAGCCTATTATATGATAAGCTACCTTAATGCAGTTATATTAGACTAGCCTTGCTCTGATTTACACAAGGAAGTTTAGAAACATGGCTATAGTGTAAATGAGAGTCTAACATGTAGCTAGCTTTCTGTGTGGTTTTATTTTCTGATCAGTAGCCTCCAGACTCTAACAGAACACCATGTTTTGTCCTGGGGTGGCTCTATTCCTTGAGCCCATGTTAGCCACTCAGGACTTCTCTTGTGTCTTTCAG
Seq C2 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCCGGCTTGGGTGCAGCCGTGGTAGCTGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCACAGTGACTACGGAGTGGATGTCATTGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTTCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-Unc5d:NM_153135:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: